Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_1852 |
Symbol | |
ID | 4038654 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007973 |
Strand | - |
Start bp | 2005367 |
End bp | 2007226 |
Gene Length | 1860 bp |
Protein Length | 619 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637977232 |
Product | acyl-CoA dehydrogenase-like protein |
Protein accession | YP_584000 |
Protein GI | 94310790 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1960] Acyl-CoA dehydrogenases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.232086 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGCTGA TTCTTTCCCG TCGTGACCTC AACTTCGTTC TGTACGAATG GCTGAAGGCC GAGGAACTGA CACAGATTCC CCGATTTTCC GATCACTCGC GCGAGACGTT CGACGCCGCG CTGGATACGT GCGAGAAAAT CGCCACTGAT CTGTTCGCCC CGCACAACAA GAAAAGCGAT GCCCAGGAGC CGCATTTCGA TGGCGAGACG GTCACGATCA TCCCCGAAGT CAAGACCGCG CTGAAGGCCT TCTGCGATGC GGGCCTGATG GCCGCCGGCC AGGACTATGA GTACGGTGGC ATGCAGTTGC CCGTCACGCT GGAGAAGGCC GCGTTCGCCT ACTTCAAGGC CGCCAACGTT GGCACGAGTT CGTACCCGTT CCTGACGATC GGTAACTCGA ACCTGCTGCT CACGCACGGC ACCCCGGCAC AGATCGATAC GTTCGTGCGT CCCGAACTGG AAGGTCGCTT CTTTGGCACG ATGTGCCTGT CGGAACCGCA GGCGGGTTCG TCGCTATCGG ACATCACCAC CCGCGCCGAC TACGAAGGCG AGTCGCCGTT GGGCCAGCAG TATCGGCTGC GCGGCAACAA GATGTGGATC TCGGCGGGCG AGCACGAGCT CTCGGACAAT ATCGTCCACC TCGTGCTGGC CAAGATCCCG GGCCCGGATG GCAAGCTGAT CCCGGGTGTG AAGGGTATCT CGCTGTTCAT CGTGCCGAAG TACCTCGTCA ACGAGGATGG CTCGCTGGGC GAGCATAACG ACGTCGTGCT GGCGGGCCTG AACCACAAGA TGGGCTATCG AGGCACCACC AACTGCCTGC TGAACTTCGG CGAAGGCATG AAGTACCGCC CGAATGGCAA GGCGGGTGCG ATCGGTTATC TGGTCGGCGA GCCGCACAAG GGCTTGGCCT GCATGTTCCA CATGATGAAC GAGGCGCGCA TTGGCGTTGG CCTCGGCGCC GTGGCACTTG GCTATACCGG TTACCTCCAC GCGCTGGACT ACGCGCGCAA TCGTCCGCAG GGCCGCCCGG TGGGGCCGCA GGGCAAGGAT CCGGCGAGCC CGCAGGTCAA GCTGGTCGAA CATGCCGACG TCCGTCGGAT GCTGCTGGCG CAAAAGAGCT ACGTCGAAGG CGGTCTGGCG TTGAACCTGT ACTGCGCGCG GCTGGTCGAC GACGAGCACG CGGCCAAGGC GGCCGGCGAG GCCGAGCGGC AATGCGAACT GTCGCTGCTG TTGGATATCC TCACGCCGAT CGCCAAGAGC TGGCCGTCGC AGTGGTGCCT GGAAGCCAAT AGCCTGGCCA TCCAGGTGCA TGGTGGCTAC GGCTACACGC GCGAGTACAA CGTCGAGCAG TTCTATCGCG ACAACCGCCT CAATCCGATC CACGAAGGCA CGCACGGTAT TCAGGGGCTG GACCTGCTGG GCCGCAAGGT GGTGATGCAG GACGGCGCCG CATTCCAGTT GCTCGGCAAG CGCGTGCAGG ACACTTGCCA GCGGGCGCAG GCCACGGGTG ACAAGACGCT GGGCGAGCAG GCCCGCGCGC TTGGCGCTGC GACCGCGCGC CTGGCCGAGG TCACGCGCAC GCTGTGGGCG GCCGGAGATT CGAATGTCAC GCTGGCCAAC GCGTCGGTAT ATCTGGAGGC ATTCGGCCAT GTCGTCATGG CGTGGATCTG GCTTGAGCAG GTGCTGGTAG CGCAGGCCGC GCTGTCGAAC GCCAAGGGCG AGGATGCCGA TTTCTATCGC GGCAAGCTGG CTGCGGCGGC GTTCTTCTTC AACTTCGAGT TGCCGAAGGT GTACCCGCAA CTCGAGCTGC TTGCATCGCT CGATCGTACG ACGCTTGACA TGCAGGACGC CTGGTTCTGA
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Protein sequence | MSLILSRRDL NFVLYEWLKA EELTQIPRFS DHSRETFDAA LDTCEKIATD LFAPHNKKSD AQEPHFDGET VTIIPEVKTA LKAFCDAGLM AAGQDYEYGG MQLPVTLEKA AFAYFKAANV GTSSYPFLTI GNSNLLLTHG TPAQIDTFVR PELEGRFFGT MCLSEPQAGS SLSDITTRAD YEGESPLGQQ YRLRGNKMWI SAGEHELSDN IVHLVLAKIP GPDGKLIPGV KGISLFIVPK YLVNEDGSLG EHNDVVLAGL NHKMGYRGTT NCLLNFGEGM KYRPNGKAGA IGYLVGEPHK GLACMFHMMN EARIGVGLGA VALGYTGYLH ALDYARNRPQ GRPVGPQGKD PASPQVKLVE HADVRRMLLA QKSYVEGGLA LNLYCARLVD DEHAAKAAGE AERQCELSLL LDILTPIAKS WPSQWCLEAN SLAIQVHGGY GYTREYNVEQ FYRDNRLNPI HEGTHGIQGL DLLGRKVVMQ DGAAFQLLGK RVQDTCQRAQ ATGDKTLGEQ ARALGAATAR LAEVTRTLWA AGDSNVTLAN ASVYLEAFGH VVMAWIWLEQ VLVAQAALSN AKGEDADFYR GKLAAAAFFF NFELPKVYPQ LELLASLDRT TLDMQDAWF
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