| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_0231 |
|---|
| Symbol | |
|---|
| ID | 4037017 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | + |
|---|
| Start bp | 246473 |
|---|
| End bp | 248074 |
|---|
| Gene Length | 1602 bp |
|---|
| Protein Length | 533 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637975604 |
|---|
| Product | histidine ammonia-lyase |
|---|
| Protein accession | YP_582386 |
|---|
| Protein GI | 94309176 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2986] Histidine ammonia-lyase |
|---|
| TIGRFAM ID | [TIGR01225] histidine ammonia-lyase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCACG CCCATCCGGC CGACATCGAC GGCCACCACC TGACCCCCGA CACCGTCGCC
GCCATCGCAC GCGGCCAGCG CGCCGCCATC GTCCCGGAGC CCGTCCTCGG CAAGGTTGCC
GATGCCCGCG CCCGCTTCGA GCAGGTGGCT GCGGCCAATG TGCCGATCTA CGGCGTCTCC
ACGGGCTTTG GCGAACTGGT ACACAACTGG GTCGACATCG AACATGGCCG TGCGCTGCAG
GAGAACCTGT TGCGCAGCCA TTGCGCGGGT GTGGGTCCGC TGTTTTCGCG CGACGAGGTC
CGCGCGATGA TGGTCGCGCG TGCCAATGCG TTGGCACGCG GATACTCGGC GGTGCGGCCG
GCCGTTATCG AACAACTGCT GAAGTATCTG GAAGCCGGCA TCACGCCAGC CGTGCCGCAG
GTGGGTTCGC TCGGGGCCAG CGGTGATCTC GCGCCTCTGT CGCACGTCGC CATCACGCTG
ATCGGCGAAG GCAAGGTGCT GACCGAGGAT GGCGGTACGG CACCCACGGC CGAAGTCCTG
CGCGAGCGTG GCATCACGCC GCTCGCGCTG GCGTACAAGG AAGGGCTGGC GCTGATCAAC
GGGACATCGG CCATGACCGG GGTGTCGTGC CTGTTGCTGG AGACGCTGCG CGCGCAGGTC
CAGCAGGCCG AGATCATCGC GGCGCTGGCG CTCGAAGGAC TATCCGCCTC GGCCGATGCC
TTCATGGCCC ATGGGCACGA CATCGCCAAA CCGCATCCGG GACAGATCCG CTCGGCGGCG
AACATGCGCG CGCTGCTGGC CGATTCGGCA CGGCTCTCCG GACATGGCGA ACTGTCCGCC
GAGATGAAGA CACGCGCGGG CGAGGCCAAG AACACCGGCA CTGGCGTGTT CATCCAGAAG
GCCTACACGC TGCGCTGCAT TCCGCAGGTG CTTGGCGCGG TGCGCGATAC GCTCGACCAT
TGCGCCACCG TGGTCGAGCG CGAACTGAAT TCATCGAATG ACAATCCGCT GTTCTTCGAA
GACGGCGAGC TGTTCCACGG CGGCAACTTC CACGGCCAGC AGGTGGCATT CGCAATGGAC
TTCCTGGCCA TCGCCGCCAC GCAACTGGGC GTGGTGTCGG AGCGCCGCCT GAACCGCCTG
CTGAGCCCGC ATCTGAACAA CAATCTGCCG GCGTTCCTGG CGGCGGCGAA CGAGGGGTTG
TCGTGCGGGT TTGCCGGGGC ACAGTATCCG GCCACGGCGT TGATTGCCGA GAACCGCACG
ATCTGCAGCC CGGCGAGCAT CCAGAGTGTG CCGTCGAACG GCGACAACCA GGATGTGGTC
AGCATGGGGC TGATCGCTGC CCGCAATGCC CGCCGCATTC TCGACAATAA CCAGTACATC
CTCGCGCTGG AGTTGCTGGC GTCATGTCAG GCCGCCGAAC TCGCGGGCGC GGTCGAGCAA
CTGGCGCCGG CAGGCCGCGC CGTGTTCGCG TTCGTGCGGG AGCGCGTGCC GTTCCTGTCG
ATCGATCGCT ATATGACCGA CGACATCGAG GCTATGGCGG CGCTGCTCCG TCAGGGCGCG
CTGGTTGAGG TCGTGCGTGG CGCGGGCATC GAACTGGCCT GA
|
|---|
| Protein sequence | MPHAHPADID GHHLTPDTVA AIARGQRAAI VPEPVLGKVA DARARFEQVA AANVPIYGVS
TGFGELVHNW VDIEHGRALQ ENLLRSHCAG VGPLFSRDEV RAMMVARANA LARGYSAVRP
AVIEQLLKYL EAGITPAVPQ VGSLGASGDL APLSHVAITL IGEGKVLTED GGTAPTAEVL
RERGITPLAL AYKEGLALIN GTSAMTGVSC LLLETLRAQV QQAEIIAALA LEGLSASADA
FMAHGHDIAK PHPGQIRSAA NMRALLADSA RLSGHGELSA EMKTRAGEAK NTGTGVFIQK
AYTLRCIPQV LGAVRDTLDH CATVVERELN SSNDNPLFFE DGELFHGGNF HGQQVAFAMD
FLAIAATQLG VVSERRLNRL LSPHLNNNLP AFLAAANEGL SCGFAGAQYP ATALIAENRT
ICSPASIQSV PSNGDNQDVV SMGLIAARNA RRILDNNQYI LALELLASCQ AAELAGAVEQ
LAPAGRAVFA FVRERVPFLS IDRYMTDDIE AMAALLRQGA LVEVVRGAGI ELA
|
|---|
| |