| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_2948 |
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| Symbol | |
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| ID | 4031081 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | + |
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| Start bp | 3237074 |
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| End bp | 3239089 |
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| Gene Length | 2016 bp |
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| Protein Length | 671 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637971392 |
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| Product | Type I secretion system ATPase, PrtD |
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| Protein accession | YP_578174 |
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| Protein GI | 92118445 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTCTGA GCGACAATCA AGCCATTGCC AATCCGCCGG CGGATTCAGG CGATCGTTAC
TCGAAGGACG CGCTCATAGC GCAGGCCAGA AAACTGACGC AGAAATTATG GCGAAACCCG
TTTGAGAAGC CAGCCGAAAC GCTCGATGCA CGAACGGACA TAACGCCGGC ACCCGCCCCG
CCGAGGCGGA ATGGAGCCGA AAGTCCTCTG GCACCAACGA ACGGGCATGC TCTTAACGGC
AAAGGAAATC TCAACGGTGG CGGCGGCGGT GGCGGCAATC CGCAATTGCG CAAGCGTTCC
GGCGACAACG AATTCCGCGA CGTCCTCGGC AAGGGATTGG CTGCCGCACG TCGCAACCTG
ATCACCGTCG GCATTTTCTC GCTTGTCGTG AATCTTCTCG TTCTTTCCAT CCCCATTTAT
CTGTTCAACA TGTCGGACCG CGTGCTGACC AGCCGAAGCG TCGATACGTT GATCATGCTG
TCGTCGATCG TCATTCTGGC TATCGCAGCC CACGTTCTGA TGGACATGCT GCGCCGCTTT
ATCCTGATGA GAGTTGCCGT CGAGACCGAG GCCCGCCTGG GCGGCCCGGT GCTGAGTGCT
GCGGCGAAAT CGGCACAAAA CGGCTCGAGC CGGGAGTTTC AGACCCTCGC CGACCTGCAG
CATTTGCGCG CATTCATTAC CGGTCCGGTC CTGCTGACGA TCTTCGATGC TCCGGTGACG
CCCGCTTATC TCGCTGTTGT GTTCCTGATC AACCCGCAAC TCGGACTGAT CGTCCTTGTA
TCGAGCGTGT CGCTGGTTGG AGTCGCGCTC ATCAACCAGC GCGTGACCGC GATACCCTTC
ACGCGGGCGA ATGCCTTCGG AACCCGCGCC AACCTGCAAG CGGAGGCGAT GGCACGCAAC
GCCCAGGTGA TCAACGCGAT GGGCATGATT CCGGAAGGCG TCCAGGTCTG GGGACAGGAG
ACGGTGGAAT CGCTCAAGGC TCAGGTCGCC GGCCACGACC TCAACATCAT CATGACCGGC
ATTTCAAAGT TCCTGCGACT GGGGACCCAG ATCACCATAC TCGGATGGGG CGCCTACCTC
GCACTGGAGA GCGAACTGAC CGGAGGCATG ATCATCGCGG CATCGATCGT CGCCAGCCGC
GCCCTGGCGC CCCTTGAAGG CACGATCGAA GGATGGCGCC ACTTCGTGCA GGCGCGTTCG
GCCTACAGCC GCATCAAGAC CCTGCTTCAG AGTTCGCCGC TCAACCTCGA ACGGTTGCGA
TTGCCGCGTC CGGAGGGCCG CCTCAGCGTC GAACGCATCC TCTACGTCCC TCCGCCGAAC
AAGAAGGTGA TCCTCAACGG CATCAGCTTC CAGCTTGAGC CGGGCGAATC CCTCGCAATC
GTGGGACCTT CGGGCACCGG CAAGACCATG CTGGCGCGAA TGCTGGTCGG CTCGATCATT
CCGACCGCCG GAAATGTCCG CCTCGACATG ATGGACCTGC GCAATTGGGA CCCGCGCCAG
TTCGGCGAAA GCGTCGGCTA TCTACCGCAG GAAGTTCAAC TGTTTCCGGC GTCGATCAAG
GCGAACATCG CGCGTATGCG CGCCGACGCC ATCGACGAGG ACATCTTCGA TGCCGCTGAA
ACCGCCGACG TGCATGAAAT GATTTCGGAG CTCGCCCTCG GCTACGAAAC CGTGATCGGC
ATGGACGGCA GCCCTTTGTC GGGCGGGCAG CGGCAACGGA TCGGCCTTGC GCGCGCCTTC
TACGGCAACC CGCGATTGAT CGTGCTTGAT GAGCCGAACG CTAATCTCGA CGCCAACGGC
GAACGCGCGC TGGCGAAGGC GCTGGTGCGC GCCAAGGAAA AGCGGATGAC CGTCGTCACC
ATCACGCAAC GGCCGGCGCT GCTGCAGAGC GTGGATAAGA TCATGATCCT GCAAAACGGC
TCGGTGCAGG CCTTCGGAAC GCGCGCCGAA CTGATTCCGC TGGTGACGGG CCACAAACAA
CCCAGCGCTT CGGGACCGCC AATGCTCGAC GCCTGA
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| Protein sequence | MSLSDNQAIA NPPADSGDRY SKDALIAQAR KLTQKLWRNP FEKPAETLDA RTDITPAPAP
PRRNGAESPL APTNGHALNG KGNLNGGGGG GGNPQLRKRS GDNEFRDVLG KGLAAARRNL
ITVGIFSLVV NLLVLSIPIY LFNMSDRVLT SRSVDTLIML SSIVILAIAA HVLMDMLRRF
ILMRVAVETE ARLGGPVLSA AAKSAQNGSS REFQTLADLQ HLRAFITGPV LLTIFDAPVT
PAYLAVVFLI NPQLGLIVLV SSVSLVGVAL INQRVTAIPF TRANAFGTRA NLQAEAMARN
AQVINAMGMI PEGVQVWGQE TVESLKAQVA GHDLNIIMTG ISKFLRLGTQ ITILGWGAYL
ALESELTGGM IIAASIVASR ALAPLEGTIE GWRHFVQARS AYSRIKTLLQ SSPLNLERLR
LPRPEGRLSV ERILYVPPPN KKVILNGISF QLEPGESLAI VGPSGTGKTM LARMLVGSII
PTAGNVRLDM MDLRNWDPRQ FGESVGYLPQ EVQLFPASIK ANIARMRADA IDEDIFDAAE
TADVHEMISE LALGYETVIG MDGSPLSGGQ RQRIGLARAF YGNPRLIVLD EPNANLDANG
ERALAKALVR AKEKRMTVVT ITQRPALLQS VDKIMILQNG SVQAFGTRAE LIPLVTGHKQ
PSASGPPMLD A
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