| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_1727 |
|---|
| Symbol | |
|---|
| ID | 4030346 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | + |
|---|
| Start bp | 1927555 |
|---|
| End bp | 1928358 |
|---|
| Gene Length | 804 bp |
|---|
| Protein Length | 267 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637970199 |
|---|
| Product | phage integrase |
|---|
| Protein accession | YP_577003 |
|---|
| Protein GI | 92117274 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.539916 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTGGCGT GGCGTCGTGG CCAGCGTGTC TCGCGCCGCG GTAAGCGGAC CAAGGAACAA
GTGCAGGCGC TCCCGCTGAT CTCTAACGCC ACTGTCAACC GGTCGACGAT CAAGGTATTG
CAGCGGCTGT TCACGTTCGC CAAGGCCGAA AAGGCGGTAT TCGAGGACGA GCCCGAATGG
GAAAAGCTGC TGTTGGCCGA ACCGGTGGAG CGAGTCCGCG AATTGAAGAT CGAGGAGGCT
GACGCCCTCG ACGACGCGAT GCGCGTGGAT TATGAGCCAT TCTTCGATTT CGTTCGCGCC
AGTGGCATGC GACTCAAAGA GTGCGTCACC CTGCGCTGGA GCGAGGTTGA TTTCGGCACT
CGGCAAATTG TTCGAACCGG CAAGGGCGGT CGGCGCGTGG TGTTTCCCAT TACCGCGGCG
GTACGCGAAA TCCTGTTTCC GCTGCAGGGT CAGCATCCCG AGTTCGTATT CACCTACGTT
GCGGTTTATG GCAACAAGCG GCTGCGCCGG GTGAGGGGAC AACGCTATTC CTTGACCTAC
ACCGGAGCCA AGACCGCATG GCAACGGCTC CGCGCCAGTT CTGGCGTGGC CAACTTTCGA
TTCCACGACT TCCGCCATGA CTTCGGAACC AAGCTTCTCC GCGACAGCGG AAACCTTAAG
CTGGTTCAAA AGGCGTTAAA CCACCGGGAC ATCAAGAGTA CGCTGCGCTA CGCGCACGTG
TTGGACGAGG ATGTAGCTGT TGCCGTCGAG CGACTCGCAG AGTCCCGGAA AAAGTCCCGG
AGTAAACCCC GTAAGGCGAG CTAA
|
|---|
| Protein sequence | MVAWRRGQRV SRRGKRTKEQ VQALPLISNA TVNRSTIKVL QRLFTFAKAE KAVFEDEPEW
EKLLLAEPVE RVRELKIEEA DALDDAMRVD YEPFFDFVRA SGMRLKECVT LRWSEVDFGT
RQIVRTGKGG RRVVFPITAA VREILFPLQG QHPEFVFTYV AVYGNKRLRR VRGQRYSLTY
TGAKTAWQRL RASSGVANFR FHDFRHDFGT KLLRDSGNLK LVQKALNHRD IKSTLRYAHV
LDEDVAVAVE RLAESRKKSR SKPRKAS
|
|---|
| |