Gene Nham_1053 details

Gene Information

• Locus tag: Nham_1053
• ID: 4031659
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrobacter hamburgensis X14
• Kingdom: Bacteria
• Replicon accession: NC_007964
• Strand: +
• Start bp: 1179297
• End bp: 1181336
• Gene Length: 2040 bp
• Protein Length: 679 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 637969551
• Product: Sel1-like
• Protein accession: YP_576361
• Protein GI: 92116632
• COG category: [R] General function prediction only
• COG ID: [COG0790] FOG: TPR repeat, SEL1 subfamily

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTTTCAT CGCGATCGCT TTTCGAGTGG TTTCGACCGG CTTCCGCATC ATCCCGCGCT 
GCCCCTCTGG CGCATGGAAT GGCTGCATAC GAGCGCCGTC AGTATCTGGA GGCGATCAAG 
CTCTGGAAGC TCGCGTCAGA GGCTGGCGAG GCCGAAGCGG GCTATCGAAT AGGAATGCTC 
TATGTGAGAG GCGAGGGGGT CGTCAGAAGC GTGCCCGATG CCGTCGTCTG GTATGAGTGG 
GCGGCCCGAC TCGGCAACGT CGAAGCCATG TTCCAACTCG GCTTGATCTT TCTACATGGA 
GACAAGCCGC TGCTCGGTCC CTGTCGCCAC GAAACGTGGC GCCAGTCCTC CGCCGTTCGG 
CTCGGCGACA AAGCGTCAAC TATTCACCAG CTCGTGTTTC CGCATGGAAC AAGCGTTGAG 
CGGAATGTCG ACGCTGCTTT CGGTTGGATA GCGGTCGCGG CGGAAAGAGG CAAAGCAGAA 
GCACAGACGG TCCTTGGCAA CATGTACTGC GAGGGAGTCG GCTGCGAGAA GGATTTCCGT 
GCGGCGCTCG CATGGTATCG GGCCGCGGCC GACCAGAACT GCGCCGCAGC CGAATTCGCG 
CTTGGCGACG TCCATTATCA AGGCAAAGGC GTTCCCGTTG ATTTCGAGCA GGCGGCGGTC 
TGGTACCGCA AGGCGGCCGA ACAGGATCAT GTCAGGGCGC AGGTTGCGCT TGCGTTCATG 
AACCTGAAAG GAACGGGCCT GCCGGAGGAC CCCGCTGAAG CCGCTCGCCT GTTCCAGGGT 
GCCGCCAGGC AAGACGATAC GATCGCGCTC TACAACATCG GCCTGTTGCG CTTGAACGGC 
CATGGCGTTG CGAAGGATAT CGACCGGGCC GAAACCGCAC TGCGCAAGGC GGCGCGCAAG 
GACTACTTTC CGGCAGTCCA GGCGCTGGCG GATTTTTATT CGCACGGCGC AGGCTCCGAG 
CCCGATTTGC GGGAGGCCGC GGTCTGGTAC GAGAAGGCCG CCGAGCGGGA CGATGTGCAG 
GCGCAGTTTT TCATGGGCCG CTTCTATGCG ACGGGCACCG GCGTCGGTCC GAATATCCGT 
CAAGCCGCAA AATGGTTCGA GCGCGCGGCC GGGAATGGTC ATGCGACCGC CGCGTTCAAC 
ATCGCCATCT TCTATCTCAA TGGCTCCGGC GTCGAACGCA ATGTGGAAGC CGCAATCGAA 
TGGTTCGAGC GCGCATCCGA AAGCGGCATC CGCGCCGCGC AGTTGCAACT CGGGAGGCTT 
TATTCGGCGG GCAATGGGGT TCCGCGAGAT CACAAGCGGG CGGGAGAATG GCTCAGCAAG 
GCCGCTTCGG GCGGAGAGCC GGACGCCAAG ACGGCCTATG CGTTTTTCCT GCTTCACCAC 
GACGATTCGA CCGAGCGGCT TGAACAGGTG CGATCACTGT TGAGCGAGGC GGCTGAAGCC 
GGCCACGCGC CGGCTGCATT CCAGCTCGGT GTGTTGGAAA TGGGCAGGTT TGGCGGGAGC 
GTGGATGTCG AAGCTGCCGT GTCGTGGTTC TCCCGTGCCG CCGGCGCAGG TCATGTCGAG 
GGCCAATACA CTTTGGCGCT TCTGTATCTC GATCCGAACA ACGCCGTGAG CGATGCGAAG 
GCAGCGGTAT CCTGGATGAC CAGAGCCGCC CATGCAGGCC ATGCTGGCGC GCAGTTTCAG 
CTCGCCGTGA TCTATTGCAC CGGCGCAGGC GTAGCCCAGG ATGTCGCGCA GGGCGCGAAC 
TGGTACGAGG CTGCCGCGCG ACAGGGGCAT AAGGTAGCGC AGTTCAACCT CGCGGTGATG 
CTTGGAAAAG GACAGGGCTG CGAGGCCGAT CCCGGGAAGG CGGTCGAATG GTTCGAGAAA 
GCGGCTGAGC AGGATATGGC GGAAGCGCAG GTTGCGCTCG GCGATGCGTT GATGTCGGGA 
AGCGGCGTTG CGCAAGACCG GGACGCGGCG GTGCACTGGT ATCAGCAGGC CGCGCGGCAA 
AACCACGAAG GGGCGGTGCG CCGTCTGGAT GCGATCGGCG TGACGCTGGT CGATGGTTGA 

 

Protein sequence

MLSSRSLFEW FRPASASSRA APLAHGMAAY ERRQYLEAIK LWKLASEAGE AEAGYRIGML 
YVRGEGVVRS VPDAVVWYEW AARLGNVEAM FQLGLIFLHG DKPLLGPCRH ETWRQSSAVR 
LGDKASTIHQ LVFPHGTSVE RNVDAAFGWI AVAAERGKAE AQTVLGNMYC EGVGCEKDFR 
AALAWYRAAA DQNCAAAEFA LGDVHYQGKG VPVDFEQAAV WYRKAAEQDH VRAQVALAFM 
NLKGTGLPED PAEAARLFQG AARQDDTIAL YNIGLLRLNG HGVAKDIDRA ETALRKAARK 
DYFPAVQALA DFYSHGAGSE PDLREAAVWY EKAAERDDVQ AQFFMGRFYA TGTGVGPNIR 
QAAKWFERAA GNGHATAAFN IAIFYLNGSG VERNVEAAIE WFERASESGI RAAQLQLGRL 
YSAGNGVPRD HKRAGEWLSK AASGGEPDAK TAYAFFLLHH DDSTERLEQV RSLLSEAAEA 
GHAPAAFQLG VLEMGRFGGS VDVEAAVSWF SRAAGAGHVE GQYTLALLYL DPNNAVSDAK 
AAVSWMTRAA HAGHAGAQFQ LAVIYCTGAG VAQDVAQGAN WYEAAARQGH KVAQFNLAVM 
LGKGQGCEAD PGKAVEWFEK AAEQDMAEAQ VALGDALMSG SGVAQDRDAA VHWYQQAARQ 
NHEGAVRRLD AIGVTLVDG