Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Nham_0401 |
Symbol | |
ID | 4030134 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrobacter hamburgensis X14 |
Kingdom | Bacteria |
Replicon accession | NC_007964 |
Strand | - |
Start bp | 442300 |
End bp | 443178 |
Gene Length | 879 bp |
Protein Length | 292 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637968930 |
Product | pseudouridine synthase |
Protein accession | YP_575752 |
Protein GI | 92116023 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATACGC CCCAACTCAG CGCCGAACAA ATCCAGGCCC GCGTGCTCCA CCGCGACGGG CTGATGCTGG TGATCGACAA GCCGGCCGGC ATCCCCGTGC ATCGCGGTCC CAAGGGCGGC GCCAATCTCG AGGCGTCGTT CGAGGCGCTG CGGTTCGGCC TGCCGCGGCC GCCGGTGCTT GCCCATCGGC TCGACCGCGA CACCTCGGGC TGTCTGGTGC TCGGACGTCA TCGCAAGGCG ACGGCGTCGC TCGGCCTGCT GTTCAAGCAC GGCAAAATTT CAAAAACCTA CTGGGCCGTG GTCGAGGGCG GCCCCACTGA GGACGAGGGC ACCATCGACA TTCCACTCGG ACGGCTGAAC CACGAACGCG GCTGGTGGCA GAAGCCGGAC CCGAACGGGC TGCCGTCGGT GACAAGATGG AAAGTACTGG GGCGCGGCAT TTTCACTGCG GCCAGCGATC GCTTCTCCCC TTCCCCTTGC GGGGTCGAGA CGAGCGAAGC CCGTCCTGAG GGGGCGGGCG CGAGGGGCAA CAGTGACGGC ATTGCACCAG ATCACCCCCC TCCCCGCGCA AGGGAGGAGG GAATTCAACT CACCTGGCTG GCGCTGGAGC CGGTCACCGG CCGCACCCAT CAACTGCGCG TCCATTGTGC GGCGATGCGC TGGCCGATCG CCGGCGACAA CATTTACGGA ACGCAGGCAA GTCTGCGCCG CCTGCGCAAT GAACAATATA TCCCACAGTT CGGCGAACCC AGTCTGCATC TGCATGCGCG CGAGATCGCG ATTCCCCTAT CGAAGAACAA ACCGCCCATC GTCGTCACCG CATCCGCGCC CGTGCATTTG CACGCGCGAC TCAAGGCGTG CGGGTGGAAT GGGGAGTAA
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Protein sequence | MDTPQLSAEQ IQARVLHRDG LMLVIDKPAG IPVHRGPKGG ANLEASFEAL RFGLPRPPVL AHRLDRDTSG CLVLGRHRKA TASLGLLFKH GKISKTYWAV VEGGPTEDEG TIDIPLGRLN HERGWWQKPD PNGLPSVTRW KVLGRGIFTA ASDRFSPSPC GVETSEARPE GAGARGNSDG IAPDHPPPRA REEGIQLTWL ALEPVTGRTH QLRVHCAAMR WPIAGDNIYG TQASLRRLRN EQYIPQFGEP SLHLHAREIA IPLSKNKPPI VVTASAPVHL HARLKACGWN GE
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