| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_4579 |
|---|
| Symbol | |
|---|
| ID | 4025347 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007961 |
|---|
| Strand | + |
|---|
| Start bp | 33183 |
|---|
| End bp | 34838 |
|---|
| Gene Length | 1656 bp |
|---|
| Protein Length | 551 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637965078 |
|---|
| Product | integrase catalytic subunit |
|---|
| Protein accession | YP_571986 |
|---|
| Protein GI | 92109700 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGTTCATG GGCCTGACAA GAACTCGGTC GATGAGAGTA CCTGGAGCGA GGCGGTTTCG
AGGGAGGCCG TGATCCGACG ACTGGTGTCG CTTGACCGTC CCGGCCGGTC GGATTTCCTC
CGCGCTTGCC ATGAACTCGG CGTCAAACGA ACCCGCCTCT ATGAGCTGAT CGGGGCCTAT
CGCGAGCATC CCGTCGCGAG TTCACTGTTG CCGCGCCCGG CAGGCACGCG ACAAGGCAGT
CGCCGATTGC CGGACGAGAC CGAAGCGGTG ATCGCCGAGG CGTTGCAGGA CTTCTACAAG
ACACGCCAGA AGCCGAGCAT CAATCGGCTG CACAAGGAAA TCCGCCGGCT CTGCCGTGTG
CGCGGCCTGC GGGCGCCATC CTGGCATGCT GTCAGAGCGC GGATCGCTGC GCTTGATCCT
GCCGAACTCG CCATGGCGCG GGAGGGTCCG AAGGCCGCGC GGGACCGTTT CCGGCCCGTT
CCGGGGCAAT ACGAAGCGGG GCATGCCTTT GCGGTTGTTC AGATCGATCA TACGCTGGTC
GACGTGATCG TCGTTGATCG CCAGCACCGA CGGCCGCTGC AAAGACCGTG GTTGACGCTC
GCCATCGATG TTGCGAGCCG CATGGTCGCG GGCTTCTATC TGACGCTCGA GGCGCCGTCG
GCGGTTTCGG TTGCGCTCGC AATCCAGCAC CTCGTGCAGC CGAAAGAGCC ATGGCTTGCC
GGACTGGGGA TCGATGCGGA TTGGCCGACC TGCGGATTCC CCGAGGCGAT CCATGTCGAT
AACGCCAGGG AATTTCGGTC GCGCGCCCTG CGACGTGGCG CGGAGGAATA TGGCGTCGAA
CTGATCCACC GGCCGGTCGC GACGCCCCAT TACGGAGGCC ATATCGAACG GCTGATCGGC
ACGATGATGG GCGCGGTCCA TCTTCTGCCG GGCACAACCT TCAGCGATAT TGACGAGCGC
GGCGATTATG ATTCAGCCGC CAATGCGATG ATGACGCTGG ATGAACTTGA ACAGTGGATG
GCGCTTGAGA TCACGCGTTA CCATGCTGAT CGGCATGGAG CCTTGGGAAT CCCGCCGCTG
GCGGCCTGGC ATGAAGCCTT GGCCCGCCGT GTCAGGCCCG TGTGTCAGCC CCATGATCTC
GCCGGTTTCA TGATCGATTT CCTGCCTTCC GTTGACCGGC AGGTCCGACG CGACGGCATT
CACCTGTTCG GCCTGCGTTA CTGGGATGAC ATCCTGAGCA TCTGGGCCGG CCGGCTCGAT
CGGCCTTTGC GTGTGGCTTA CGACCCACGC GATCTTTCCA AGATCTACGT CAGGGCTCCG
GATGGCACGC GCTGGCCGAT CCGCTTTGCC GATTTGCGGC GACCGCCGAT TACGCTGGGC
GAGCATCGCC GCGCCCGGAC CGCCCTGCGG GAGCGCGGTC TGGCGCTTGT CGACGAGCAA
TTGATCTTCG AGACCATCGA AGCCCAGCGC ATGCTGGTCG ATGAGGCCAC CCGGCGCACC
AAAGCGGCGC GTCAGCTGGC CGAAAAGCGC GACCGCGCGC TCGGCGCCGC CACGGCGCAC
AGCTCCTCGG CGCCGGCCGA GCCGAGGCAA GCCGAGGACG ATCGACCGAT CGACTGGAGC
AAGGTGCCCA TCTTTCCCGT CGAGGAATGG TCGTGA
|
|---|
| Protein sequence | MVHGPDKNSV DESTWSEAVS REAVIRRLVS LDRPGRSDFL RACHELGVKR TRLYELIGAY
REHPVASSLL PRPAGTRQGS RRLPDETEAV IAEALQDFYK TRQKPSINRL HKEIRRLCRV
RGLRAPSWHA VRARIAALDP AELAMAREGP KAARDRFRPV PGQYEAGHAF AVVQIDHTLV
DVIVVDRQHR RPLQRPWLTL AIDVASRMVA GFYLTLEAPS AVSVALAIQH LVQPKEPWLA
GLGIDADWPT CGFPEAIHVD NAREFRSRAL RRGAEEYGVE LIHRPVATPH YGGHIERLIG
TMMGAVHLLP GTTFSDIDER GDYDSAANAM MTLDELEQWM ALEITRYHAD RHGALGIPPL
AAWHEALARR VRPVCQPHDL AGFMIDFLPS VDRQVRRDGI HLFGLRYWDD ILSIWAGRLD
RPLRVAYDPR DLSKIYVRAP DGTRWPIRFA DLRRPPITLG EHRRARTALR ERGLALVDEQ
LIFETIEAQR MLVDEATRRT KAARQLAEKR DRALGAATAH SSSAPAEPRQ AEDDRPIDWS
KVPIFPVEEW S
|
|---|
| |