Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_0434 |
Symbol | holA |
ID | 4020900 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | - |
Start bp | 500113 |
End bp | 501141 |
Gene Length | 1029 bp |
Protein Length | 342 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 637960619 |
Product | DNA polymerase III subunit delta |
Protein accession | YP_567573 |
Protein GI | 91974914 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1466] DNA polymerase III, delta subunit |
TIGRFAM ID | [TIGR01128] DNA polymerase III, delta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTCGCGC TGCGCGGAAA AGACGTCACC TCGTTTCTCG CCCGCCCCGA TGCGGCGCGG CCGATCATCC TGCTGTACGG ACCCGATTCC GGCCTGGTGC GCGAACGCGC CGACGCGCTG ATCGCCTCTG CGCTCGACGA TCCCAACGAT CCGTTCGCGC TGGTGCGGCT CGACGGCGAC GAGCTCGCCT CCGAACCGTC GCGGCTGGTC GACGAGGCGA TGTCGATTCC GATGTTCGGC GGCCGCCGCG CCATCCGCGT GCGCGCCGGC TCGCGTAGTT TCGTCGCGGG CGTCGAGACG CTGGCGGCCT CGCCGCCGCG GGAGTGCCGC GTGGTGATCG AGGCCGGCGA CATCAAGCCG GACAATGCGC TGCGCAAGGC CTGCGAAAAG GCGCCGAGCG CGGTCGCGAT CGGCTGCTAT CCGGACGCCG AGGCGGATCT CGCCAGGCTG ATCGACGATG AACTCCGCCA TTCGAATCTG CAGATCGGCC GCGACGCCCG GGCCGTGCTG ATGACGCTGC TCGGCGGCGA CCGCCAGGCC TCGCGCAACG AAGTCCGCAA GCTCGCGCTC TACGCCCACG GCCAGAGCGA GATCACGCTC GACGACGTGA TGGCCTGCGT GTCCGACGCC TCCGACCTCA AGCTCGACGT CATCGTCGAC GCGGCGTTTT CGGGAAAGCC CGCGGTGGTC GAGAGTGAAT TCGCCAAGGC GATGGTCGCC GGCACCTATC CGGGGCAGAT CATTCTCGCA GCCCAGCGCC ACGCCGCGTT CCTGCACAAG ACCAGTCTCG CGGTCGAGGC CGGCGCGGCT GCGGCGACCG CGCTCGATAG TGGCTTTCCG CGGCTGCACT TTTCCCGCAA GGCCGCGTCC GAAACCGCGC TGCGCAATCT CGGCGCGCCG CGGCTGGCGC AGATCATCGA CCAGCTCGCC ACCGCCGCAT TGGAAACCCG CCGCCAGGCC ACGCTCGGCG CCGCCATCGC CCAACGCACG CTGCTGTCGA TCGCGGTGAG CGCACGGCGA AGGAATTAG
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Protein sequence | MVALRGKDVT SFLARPDAAR PIILLYGPDS GLVRERADAL IASALDDPND PFALVRLDGD ELASEPSRLV DEAMSIPMFG GRRAIRVRAG SRSFVAGVET LAASPPRECR VVIEAGDIKP DNALRKACEK APSAVAIGCY PDAEADLARL IDDELRHSNL QIGRDARAVL MTLLGGDRQA SRNEVRKLAL YAHGQSEITL DDVMACVSDA SDLKLDVIVD AAFSGKPAVV ESEFAKAMVA GTYPGQIILA AQRHAAFLHK TSLAVEAGAA AATALDSGFP RLHFSRKAAS ETALRNLGAP RLAQIIDQLA TAALETRRQA TLGAAIAQRT LLSIAVSARR RN
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