Gene RPD_0243 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_0243 
Symbol 
ID4020701 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp282222 
End bp282875 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content66% 
IMG OID637960422 
ProductHAD family hydrolase 
Protein accessionYP_567384 
Protein GI91974725 
COG category[R] General function prediction only 
COG ID[COG0637] Predicted phosphatase/phosphohexomutase 
TIGRFAM ID[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGGCCCG ACCTCGTTAT CTTCGATTGC GACGGCGTCC TGGTCGATAG CGAAGTGATT 
TCCTGCCGCG TTCACGCCGA GACGCTGACC CGCCACGGCT ATCCGATCAC CACCGAACAG
GTCGCCGAGC GCTTTCTCGG CCGTTCCGGC CGTGAGGCCC GGCGCGAGAT CGAAGCCGAA
CTCGGCCGCG TCTTCAGCGA CGATCTCGAA GCCCAGTTAG TCGCCGACGT CCTGCGCAGC
TTCGCCGAGA GCCTTGAGCC GATTCCGCAT ATCATCGCCG CGCTCGACGC GCTCACGCAG
CCGGTCTGCG TCGCCTCCAG CGGCACGCTG GAGCGCATCG CTTTCGCGCT GAACCGCACC
GGCCTGTATC GGCGCTTTGC GCCGAACTTG TTTTCTGCCG AGCAGGTCGC CAACGGCAAG
CCGGCGCCGG ATCTGTTTCT TCATGCGGCG CGGCAGATGG GCGTTCCGCC GTCGCGCTGC
GTGGTGATCG AGGACAGCGT CCCGGGCATC CTCGGCGCCA GGGCGGCCGG GATGACGGCG
CTGGGCTTCG TCGGCGGCAG CCATTGCCTG CCCGGGATGG ACGCCCGCTT GCGCGCGGCG
GGGGCCTCCG CGATCTTTGA TGATATGCGG CAATTATATG ATTTTATTAT ATAA
 
Protein sequence
MRPDLVIFDC DGVLVDSEVI SCRVHAETLT RHGYPITTEQ VAERFLGRSG REARREIEAE 
LGRVFSDDLE AQLVADVLRS FAESLEPIPH IIAALDALTQ PVCVASSGTL ERIAFALNRT
GLYRRFAPNL FSAEQVANGK PAPDLFLHAA RQMGVPPSRC VVIEDSVPGI LGARAAGMTA
LGFVGGSHCL PGMDARLRAA GASAIFDDMR QLYDFII