| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0037 |
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| Symbol | |
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| ID | 4020491 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 44958 |
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| End bp | 48305 |
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| Gene Length | 3348 bp |
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| Protein Length | 1115 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637960213 |
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| Product | UvrD/REP helicase |
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| Protein accession | YP_567178 |
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| Protein GI | 91974519 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACCGA TTCCGGATCT TGTCGCGCGG GCCAGGGCGC TGACCGCCAT CGAGAACACC
CTGCTGGTCG AGGCCGGCGC CGGCTCGGGC AAGACGTCGG TTATGGCGGG CCGGGTGGCG
GTGCTGTTTG GCAAGGGCGT CGAGCCGAAG AACATCGCGG CCATCACCTT CACCGAACTA
GCGGCGAGCG AGCTGCGGCT CCGGATCGAG AAGTTCACGA CGGCGCTATC GCTGGGCGAT
GTGCCGCCGG ATCTCACCCA GGCGTTTCCG GAAGGCGTGC CGGAGGCGGA GAAGGCCAAC
CTCTACCGCG CGTGCCAGTC TTTCGATCAG CTTGCCTGCA CTACGATCCA CGGCTTCGCG
CAGTCACTGA TCAAGCCGTA CCCGGCGGAG GCCGGCATCG ACCCCGGCGC CGACATTGTC
GACCCGGACG AAGCGGAGCT CGCGTTCGGG GAGCGCTACG ACGCCTGGCT GAAGCAGCGC
CTATCGGTCG ACGACGCCGA CGGGCTGGTG GCGCAGTTGG TGCTGGCCGA CGAGGGCGGC
GGTCTGAAGC TCATCGAGGA GGTCGCCCAG TTCTTGCGGA AGAACCGCGA CGCCCGCTGC
GCGCCGGCCG CCTGGGCCGA GAAGACGATG GCCGACGTGA TCGCGGCGGT GAAGCGGTTC
GAGGACGCGC TGGCCGCCGT CGGATTCGAG GAGGAGGACA CCGGCCTCCG ATGCCGGACG
CTGATCGCAC TTGTCGACAT CCTGAACCCG GGCAAGCTGT CGGCCGGCGC GCCGGATACG
GCGGCCTTGA TCGCGGCCCT GAACTTCCCG CGCCACACCT CCTGCTTCAC AGAGAAGGGC
ACAAGGAGGC AGCTTCGGAA CGGCACCAAG TGGCAGGATG CGGCCGCCAA GGTCGGGCTG
AAGAAGGCCG ACGGCAAGAA GACCTCCGAC GCTCTGGTGC CCCTCTATGA CGGCTGCCAT
AACGCCCTCG AAACCCTTCT CGCGGCCATC GCCGGTGAAC TGCTGTCCCG GCTGTGCGCG
GAGATGCAGG GCCTGCTGCT GGAGTGGCGG GACTACAAGC GCGACGCCGC ACTGCTGGAT
TTCGACGACC TGCTGTTCAC GGCCCGCGAC CTGCTGGCCG GGCACCCGGA GGTGCGGCGG
GCGCTGTCGC AGCGCTACCG GTACGTCCTC GTCGACGAAT TCCAGGACAC CGACCCGCTG
CAGACCGAAA TCCTGTGGAT GATCTGCGGG GAGGACTGCG AGGGCGCCGA CGGCGCGCCG
CTGAAGCGAC CCCTGCGGCC CGGCGCGCTG TTCATGGTCG GCGACCCCAA GCAGGCGATC
TACCGCTTCC GGGGCGCCGA CGTGAACGCC TACCTGGCGG CGCGCTCGGC GGTCCCGCAG
GACGCCCGGC TGGCCATCAC CGCCAACTTC CGCTCGGTCG AGCCGATCCT GGCGTTCGTC
AACAAGCGCT TCGAGAGGGT TCTCTCCGAG GAGGCCGGCC AGCCCGGCTT CGCGGAATTG
TCGCCGGTCC GGCCGCCGAA CGGCGATGCG CCGGCGGTGG TGGCGCTGGA CGTGACGTTG
CCGCAGGGCG CGTCGGGCGT CTCCGCCATC CGCGACGCCG AGGCCGCCGC CCTCGCTGAA
CTGTGCTGCC GGTTGGTTGG CAACCTGCAG GTCCACGATC CGGAGACCAA GGAGCTTCGC
CCCTGCCGAT TGGGCGACAT CGCCCTGCTG GCGCCGGCCG GCACCGAGCT GTGGCGGTTC
GAGGAGGTGC TCGAGGATCG GGGTATCCCG GTCGCGACCC AGGCCGGCAA GGGCTTCTTT
CGCCGCCAGG AGATCCACGA CCTGATCGCG CTGGTACGGA CGCTTGCCGA CCCGCGTGAC
ACCCTCGCCC TCGGCGCCCT GTTGCGCGGC CCGTTGATCG GCCTGACCGA AAACGAGCTG
CTCGACATCA TGGAGGGTCT TCCGGTCGAC CCGGACAGGC CCGCCCGTCT GCCGACGCTG
ACGGTCGGGA CCAACCCCGA GCACATCGCC CATGCGGTCG CGCGCAAGGC GATTGAGAAC
CTGCAGGCGC TGCGCCGGCG CATCCGGATA ACCACACCCT ACGCGCTGCT GGCCGACGCG
ATGTCGGATT TTCATGTACG GCCGCACCTG CGCCAGCGGT TCAGGACCGG CGCCGAGCGG
GCAGTGGCGA ACGTCGACCT CTTTCTAGAG TTCGCCCGTG CCTACGACGT CCGCGGCCTG
CGCGCCTTCT CGCGCGACAT GACGGCGAAG TGGGAGGACG ACGAGGATCA GGCCGAGGGG
CGTCCCGACG CCGAGGAAGA ATCGGTCTCG CTGATCACCG TCCACGCCGC CAAGGGCCTG
GAGTGGCCGG TGGTCATCCC GATCAACATG ACGGGCAAGC CGTTCGCCGG CGGTGTGCTG
ATGCAGGACC GGCCCAACAG CCGTTTCTCC ATCCCGGTGC TCGGCACCGA GCCGTCCGAC
TACGCCGCGA TGAAGACGAT GAACGCGTTG GAGCGGGACC GTGAGCGCGT CCGGCTCTGG
TACGTCGGCG TCACCCGCTC CCGCGACCTG TTGGTGCTGC CGAGGCACAC CGAACTGCCG
AAGGAATGCT GGGCCACCCT TGTCGACCTC GACGTCGGAG CGCTTCCCGC CGTCGATCCG
GAGAGCTTCG GCCCGGCCGG CACCAGAGCA GCCAGGATTG AAGCGAACGA GCAGACCCGC
GAGATATTCG CCGCCGAAGC CGGCCGCATC TTCGCCGCCC GGGAGAAGAT CGTTTGGCGG
CAGCCGAGCC GCAGCGAGGT GGACGGCGAA GGGGAGAAGC CGGACATCCG CATCGACCAT
TCGGAGCCGC CCGGACCGGC CGAGGTCGAG AAGCCGGTCG TCGTCGGCAG CGCGCAGCGC
GGCGTCATCC TCCACAAGCT GATGGAGGAG ATCATCAACG GCGAGGTCGG CGAGCACATG
TCCGAGATCG AGAGCCGGGC CGCCTTGCTG AAACAGCACC TGGGCATCGA GCCGACGGCC
GAACCTCAGC CGGTCGAACT CGCAGCCACG GTGCTGAAGA CGTTGGCGCT CCCAGCGATC
AAGGCACTGC GGCCTCGCAT GGTCGCCGAG CTACCGGTCT TCGGCAGCGT CGCCGGCGCC
GACGAGGAAG TCCTGATATC CGGACAGGTG GACGTGGTGG CGCTGGACGA TGCCGGCGAA
ATCGACGTGG TCGTCGACTG GAAGAGCGAC GTCGATCCTT CAGCCGCCGC CGTCGATCAC
TACCGGCAGC AGATCGGCGA CTACCGCCGG CTGACCGGCG CTAAGAAGGC GCTGCTGGTA
TTCATGACGG CGGGACAGGT CGTCGAAATC TTACTTCGAT CACGCTGA
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| Protein sequence | MKPIPDLVAR ARALTAIENT LLVEAGAGSG KTSVMAGRVA VLFGKGVEPK NIAAITFTEL
AASELRLRIE KFTTALSLGD VPPDLTQAFP EGVPEAEKAN LYRACQSFDQ LACTTIHGFA
QSLIKPYPAE AGIDPGADIV DPDEAELAFG ERYDAWLKQR LSVDDADGLV AQLVLADEGG
GLKLIEEVAQ FLRKNRDARC APAAWAEKTM ADVIAAVKRF EDALAAVGFE EEDTGLRCRT
LIALVDILNP GKLSAGAPDT AALIAALNFP RHTSCFTEKG TRRQLRNGTK WQDAAAKVGL
KKADGKKTSD ALVPLYDGCH NALETLLAAI AGELLSRLCA EMQGLLLEWR DYKRDAALLD
FDDLLFTARD LLAGHPEVRR ALSQRYRYVL VDEFQDTDPL QTEILWMICG EDCEGADGAP
LKRPLRPGAL FMVGDPKQAI YRFRGADVNA YLAARSAVPQ DARLAITANF RSVEPILAFV
NKRFERVLSE EAGQPGFAEL SPVRPPNGDA PAVVALDVTL PQGASGVSAI RDAEAAALAE
LCCRLVGNLQ VHDPETKELR PCRLGDIALL APAGTELWRF EEVLEDRGIP VATQAGKGFF
RRQEIHDLIA LVRTLADPRD TLALGALLRG PLIGLTENEL LDIMEGLPVD PDRPARLPTL
TVGTNPEHIA HAVARKAIEN LQALRRRIRI TTPYALLADA MSDFHVRPHL RQRFRTGAER
AVANVDLFLE FARAYDVRGL RAFSRDMTAK WEDDEDQAEG RPDAEEESVS LITVHAAKGL
EWPVVIPINM TGKPFAGGVL MQDRPNSRFS IPVLGTEPSD YAAMKTMNAL ERDRERVRLW
YVGVTRSRDL LVLPRHTELP KECWATLVDL DVGALPAVDP ESFGPAGTRA ARIEANEQTR
EIFAAEAGRI FAAREKIVWR QPSRSEVDGE GEKPDIRIDH SEPPGPAEVE KPVVVGSAQR
GVILHKLMEE IINGEVGEHM SEIESRAALL KQHLGIEPTA EPQPVELAAT VLKTLALPAI
KALRPRMVAE LPVFGSVAGA DEEVLISGQV DVVALDDAGE IDVVVDWKSD VDPSAAAVDH
YRQQIGDYRR LTGAKKALLV FMTAGQVVEI LLRSR
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