| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3618 |
|---|
| Symbol | |
|---|
| ID | 4020175 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 4337132 |
|---|
| End bp | 4337974 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637957679 |
|---|
| Product | rhomboid-like protein |
|---|
| Protein accession | YP_564616 |
|---|
| Protein GI | 91794965 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.000228786 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAGCCA TTGGCCAGCT TGACAATGCC CGTGCGGCGC AGGCATTTAT CGATTATCTC
AGAGGTATTG GGATTGATTG TGAGCCTGTG TCCAATGAGC AAGGTGTCAT GCTGGTTATT
CACAACGCCG AGCAACAAGC TCAAGCAAAA GCCGAGTTCG AACGCTTTTT GGCTGAACCC
TATGCCGATC GTTATTTGAA AGCCTCATGG GACTCGGGTG ATACTAAAGC ACAGTTGGAT
TACGGCGCCG CTGGGCTAGG ATTAGTACAA CACTTTATCA CTCAGTCTGG GCCGCTGACC
TTAGGGGTAT TTGCAATAAG CCTGCTGCTA TTTGCCCTGA TGAACTTCGG CTTACTCGAA
CTGGTATATA CAAGCTTATC GTTTTTTGGC GCCACTCAAG CGATTGATTT AACTCAGGTG
TGGCGGGTAT TTACCCCCAG TCTACTGCAC TTTTCCCTTC TACATATTAT GTTCAACTTA
CTCTGGTGGT GGTACTTGGG CGGGAAAATT GAGTTAAGAC TCGGTGCACC AAAGCTGCTG
GTGTTATTGC TGGTTGCCGG CACTCTGCCG AATATATTGC AGTATTTTAT TAGTGGCCCC
AATTTTGGCG GGCTTTCTGG AGTCGTCTAT GCCCTAGTGG GTTACACTTG GTTAATGGGC
AAGAGGCGAC CACAATCTGG GCTACAACTT CCCGATTCCT ACATGGGTTT TATGATGTTG
TGGTTAGTGC TTGGCTTTAC CGATCTGCTC GGCATGCCCA TAGCCAATGG CGCTCATCTT
GGTGGTTTGC TTATTGGGCT GACACAAGCG GCCTTTGACA GCCGCAAGCT CAAAGCCAGC
TAA
|
|---|
| Protein sequence | MIAIGQLDNA RAAQAFIDYL RGIGIDCEPV SNEQGVMLVI HNAEQQAQAK AEFERFLAEP
YADRYLKASW DSGDTKAQLD YGAAGLGLVQ HFITQSGPLT LGVFAISLLL FALMNFGLLE
LVYTSLSFFG ATQAIDLTQV WRVFTPSLLH FSLLHIMFNL LWWWYLGGKI ELRLGAPKLL
VLLLVAGTLP NILQYFISGP NFGGLSGVVY ALVGYTWLMG KRRPQSGLQL PDSYMGFMML
WLVLGFTDLL GMPIANGAHL GGLLIGLTQA AFDSRKLKAS
|
|---|
| |