Gene Sden_3614 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_3614 
Symbol 
ID4020171 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand+ 
Start bp4333664 
End bp4334311 
Gene Length648 bp 
Protein Length215 aa 
Translation table11 
GC content43% 
IMG OID637957675 
Productregulatory protein, TetR 
Protein accessionYP_564612 
Protein GI91794961 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0129268 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAACCC GTGATCGCAT AGTACATGCC AGCTTAGAGC TGTTTAACTT AAATGGTGAA 
CCCGGTATCA CCACTAACCA TATTGCCGCC CATTTGGGCA TGAGCCCAGG TAACCTGTAT 
TACCATTTCC GCAATAAAGA AGACATTATC CGCTCTATTT TTGACTTATA TCAGCAGCAT 
CTGGAAAAAG GCTTTCAGCC TTATGAAAAC AAACAAGTGG ATATGGCGCT GCTGATGGGC 
TACTTCGATG CGCTTTTTTA TACCTTGTGG CAATTTCGCT TTATGTACGC CAATTTAGTG 
ATTATTTTAG GTCGCGATGA AGAATTAAAA CAAAAGTATC TCGGTATTCA GCAGCAAGTG 
CTGGCCCGCA GCAGTAATAT TTTACAGCAG CTTAAGAAAG ACAAGGTACT GGATATTGCC 
GACGATGAAA TCACCCCGTT GGCGGACACT ATCCGTATGA TTGCCGGTTT TTGGATTAGC 
AACCAACTGA CCTACTCAGG GGCTGCTAAC ATTACCAAAT CCTCTCTCTA TGAAGGTCTG 
CTTAGAGTAT TAATGTTGTT TAAAGCCTAT TCCACCAGCG ATTCTTTCGA GACGTTCAAG 
CACTTAGAGC AGCATTACCG CACCCTAGCC TTGGAAGATG ACCAATAG
 
Protein sequence
MKTRDRIVHA SLELFNLNGE PGITTNHIAA HLGMSPGNLY YHFRNKEDII RSIFDLYQQH 
LEKGFQPYEN KQVDMALLMG YFDALFYTLW QFRFMYANLV IILGRDEELK QKYLGIQQQV 
LARSSNILQQ LKKDKVLDIA DDEITPLADT IRMIAGFWIS NQLTYSGAAN ITKSSLYEGL 
LRVLMLFKAY STSDSFETFK HLEQHYRTLA LEDDQ