| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1737 |
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| Symbol | |
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| ID | 4018215 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 2051771 |
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| End bp | 2052853 |
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| Gene Length | 1083 bp |
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| Protein Length | 360 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637955750 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_562744 |
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| Protein GI | 91793093 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000000190652 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAA TATTTCTCCT GATTGCCCTA TTGGCATTGG CTTGGTTTGG TTATCAAGCC
AGCCTAAGTC CTGAAATTAC CGCCACTAAA CCCCGTCCTT TAGCCAATGT GGTGGTGGCC
AAAGCAGCCA TGCAAACCGT GCGTGATGAA GTGGAAGCCA TAGGCACAAG TAAGGCATTT
GATTCTGTGA CTATCACAGC CAAAATCTCA GAGTTGATTT CTAGTGTTAA TATTCGTGAC
GGCCAGAATG TACAGAAGGG CGACTTATTG GTGCAATTGC AAAATACTGA GCAGTTGGCC
AAAGTCAGGG TTGCCGAGGT CAAGCTTGCG GAGCATCAGA GGGAGTTTGC CAGGATCCGC
AGCCTAGTGA GCAATAAGAC CATTGCTGAA AATGAACAAG ACAGATTGCA AACCCTGATT
GACACTACTA AAGCCGAATT GGCTCAAGCG GGTTCTGCCT TAGGTGACAG AGCAATCACA
GCGCCATTTT CAGGCCGCCT TGGCTTAATT CAAGTCAGTG TTGGTAGCCT TGTAACCCCA
GGACAGCAAA TCACCACCTT AGATGATGTG AGCCAAATCA AATTAGATTT TTCCGTACCT
GAGCGTTTTA TCAATGAAAT TCAAGTGGGC AAACAAGTTG AAGCCAAGGC GGTTGCTTTT
CCCGGAAGAC TATTTAATGG CAAGGTTACC TCTATCGATA GCAGAGTGAA TCCCACCACG
CGCGCCTTGA CGGTTCGCGC TATCATTCCG AATACGGATT TTGCCCTGTT ACCTGGTATG
TTAATGAAGG TGAAACTGAT TAAACAAAGC CGCGAAGCCT TATTATTGCC AGAATCAGCC
ATCATTCCTA TCCAGTCATC CCATTATATT TACACCTTAG ATGCTGATAA CAAGGTGGTG
CGTCAACAAG TCACCTTAGG AACACGCACC CGAGGTTGGG TGGAGATTGT CGAGGGAGTC
GAGCTCGACC AAGCTGTGAT CATTCGTGGT ATCTTAAAAG TGCGCCCTGG GGATGAAGTG
CAGGTAGAAT TGCAAGAGAG ATTTAAGTTC GCCATCCAAA GCACAGAGGA TACTCTGCTA
TGA
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| Protein sequence | MKKIFLLIAL LALAWFGYQA SLSPEITATK PRPLANVVVA KAAMQTVRDE VEAIGTSKAF
DSVTITAKIS ELISSVNIRD GQNVQKGDLL VQLQNTEQLA KVRVAEVKLA EHQREFARIR
SLVSNKTIAE NEQDRLQTLI DTTKAELAQA GSALGDRAIT APFSGRLGLI QVSVGSLVTP
GQQITTLDDV SQIKLDFSVP ERFINEIQVG KQVEAKAVAF PGRLFNGKVT SIDSRVNPTT
RALTVRAIIP NTDFALLPGM LMKVKLIKQS REALLLPESA IIPIQSSHYI YTLDADNKVV
RQQVTLGTRT RGWVEIVEGV ELDQAVIIRG ILKVRPGDEV QVELQERFKF AIQSTEDTLL
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