| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0706 |
|---|
| Symbol | |
|---|
| ID | 4016907 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 815187 |
|---|
| End bp | 815702 |
|---|
| Gene Length | 516 bp |
|---|
| Protein Length | 171 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637954691 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_561719 |
|---|
| Protein GI | 91792068 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1664] Integral membrane protein CcmA involved in cell shape determination |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0000000300244 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGACAA ATTCTGGGTT AATAAGGTTT TTTTCTCAAA AGCAGAGCAA ACGTTCGGAT
GTGACTTTTA TTGGTGTCGA CGCTCAATTA CAAGGTGAAA TCCAATTAAA GGGCGGTGCA
TTAATCGCTG GAAGAATACA AGGAAGATTA AGCTCAACAA GTCATGTCAA AGTGGAATTG
TCTGGGGTGA TTGAGGGTGA TGTTTATTGT AAAGAGCTTA AGGTTTGTGG ACTAGTCAAA
GGAAGGGTTT TCTGTGACAA GTTAATTATC GTCAGCTCAG GTGTTGTCGA TGGTGAGCTG
GCATGCCAAC AAATGGAAAT CTACCATGGC GGCCAGTTTA TCGGTACTCG CACGTCGGTG
TCACAAGAAG AAATCGTTCA AGAATCTGCT GTGGTTACGG ATATGGGGAT CAGTCAAACA
TTAGAAGAGG AATTGTTGGC AATGACACAA GAGGCTAAAG AAATTAAGCC TACACTAAGT
GAAACGAGCC CAAATAGTTT AAACTTGGCC AGCTAA
|
|---|
| Protein sequence | MATNSGLIRF FSQKQSKRSD VTFIGVDAQL QGEIQLKGGA LIAGRIQGRL SSTSHVKVEL
SGVIEGDVYC KELKVCGLVK GRVFCDKLII VSSGVVDGEL ACQQMEIYHG GQFIGTRTSV
SQEEIVQESA VVTDMGISQT LEEELLAMTQ EAKEIKPTLS ETSPNSLNLA S
|
|---|
| |