| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0621 |
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| Symbol | |
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| ID | 4016996 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 709491 |
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| End bp | 711551 |
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| Gene Length | 2061 bp |
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| Protein Length | 686 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637954606 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_561634 |
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| Protein GI | 91791983 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.119281 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAACAGA AAATGTTTAA AAAGAAACTT TTAGTCGCAG CAATACTTTG CACTCCAATA
ATGTCTCCTG TAAATGCCGC CGTAGATGCG CAGCCGATGA GATCGATTGA AGTGATTAAA
GTCGTAGGGG AGAAGACCGA GCGTAGCTTG AAGGATACGA CTTCTTCGGT TTCAGTTATT
GATGAAGACA AACTTGCCAG TGGCCAATAC TTATCTGTAT CAAATGCCTT ATCTGAAGTG
CCGAACCTAG TGACCTTAAC GGGTTCAGTA CCTGATATTC GCGGTATCTC TGGTAATGGT
TCAGCCACTG GATTTAACTC ATTTACTGGT GGTGCTAAGG CGAGGGTTTC AACCTTAGTT
GATGGGGTGG CCGAGCCGTT TGTGGCCGAT ATGACCGGTG ATAGTGGGCT TTGGGATATT
GAGCAGGTAG AAGTGTTTCG CGGCCCGCAA TCTACTATCA ATGGCCGCAA TAGCATAGGT
GGCACCATAT TTGTAAAAAC CAAAGATCCT ACTTTTGATT GGAATGGCGC TGTGCGAGGG
GGGTATCGCA ATCAGCAAGA TTACATCGAC AGTGCAGTCA TGTTGTCTGG TCCCATTTTT
GAAGACCAAC TTGCCTTTAG AATTTCTGGG CAAAACTTAA CCGGTAACAC CTTTAACAAA
GGTGAGGTTT ACGCTGGTAA CCCTGCCCAT TTTGATCTCA ATGAGTTAAT TAGTCGTCGT
TGGCGAGGCA AGCTATTGTG GCAACCCACA GGCGCTGATA ACTTTACTCT GCTCTATAGT
TTTACCTATA ACGATGAGAA AGGGGATACA GGGAGAAACT ATTTCTCTGG TGATAATCCT
TGGGCATACA AGCCGCTATT TCAGCGCTAC ATTGAAACAG AATCTAATAC TCATTCTGTC
AAAATAGATT ACCGCCTAAA TGATGATTAC TCTTTTGATT TGCTAGCGGC TTATATCGAT
TATGATTGGG GTTTTGAGGG CTATGAATCC GTAGCTGCAG CTGAGCAGCA GGTCATAATG
CAAGATAAGA GCTACACCTT AGACGGTAAG TTTAATTTTG GATTGCAAAA CCCTGAATTT
AATGGTTTTG TTGGTTTATC TTATTATAAG CGTGAACAGG ATTTTAGCAG CTCTGGTGGC
GTAACTTATG TGGGTGACGA CAGCAGTAGC TCGCATTCTA TTTATGGTGA AGTGAGCTAC
GCCTTAACAG AGCAATGGAA AATTATTGCT GGTGGTCGGG TAGAGAAAGA GCAGCAAATT
CGTAACTTTG CTATGAGCAC CCGAGGAAGG GTAGTGGCTG ATAAGCTAGA TGATGACCAC
AACATAGCTT TACCTAAACT GGTATTACAA TATGCGTTAA ATCAGGATAC TACGCTAGCA
GTGAGCGCTA GAAGTGGCTA TAACGCAGGT GGCGGGGCGC TCTCGTTTGC TGACAATGCC
TATTATTACT ATGAAAAAGA AACGGTAGAC ACCTTTGAGC TAAGCTCTCG TAGCAGCTTT
GATGACGGTA ATATCAATAT TAGCAGTAAC GTGTTTTACA ATAATTTTGA TGGCTATCAA
GCCTCCAATA ATGAACGTAA AATCACTAAT ATAGATGAAG CTGTTACTTA CGGGCTTGAG
CTTGAAGCGG GGGTTATGCT CAATGACGAT TGGCAGCTAA ACTCTGGGTT AGGTTTGCTA
AAAAGTGAGA TAAAAGCTGC CTCCCCAAGC TATGGTGACA TTATAGGTAA CGAGTTAAAT
TCAGCCCCTA AAATTACGGC TAATATTGGC CTTAAATATT GGGTTAACGA TGAATTGACC
TTAGGTTTGT CCGGGAATTA TGTGGGCGAG TATTACGCTG ATATTAATAA CACCACTGAG
CGCGTTGCCG GAGATTATGT GGTGTCACGT TTGAATCTTG ATTATCAAAA CGATCAATGG
CGAGTGAGTG GGTTTGTTAA TAACCTTTTT GATGAACAAG CACTTACCGT AAATGAGCCT
GCGAATCGCA GTTATCCTCA AGGTTATGCC GCTATTATAG AGCCCCGCGC GTTTGGGGTA
TCAGTGACTT ACTCTTTCTA G
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| Protein sequence | MEQKMFKKKL LVAAILCTPI MSPVNAAVDA QPMRSIEVIK VVGEKTERSL KDTTSSVSVI
DEDKLASGQY LSVSNALSEV PNLVTLTGSV PDIRGISGNG SATGFNSFTG GAKARVSTLV
DGVAEPFVAD MTGDSGLWDI EQVEVFRGPQ STINGRNSIG GTIFVKTKDP TFDWNGAVRG
GYRNQQDYID SAVMLSGPIF EDQLAFRISG QNLTGNTFNK GEVYAGNPAH FDLNELISRR
WRGKLLWQPT GADNFTLLYS FTYNDEKGDT GRNYFSGDNP WAYKPLFQRY IETESNTHSV
KIDYRLNDDY SFDLLAAYID YDWGFEGYES VAAAEQQVIM QDKSYTLDGK FNFGLQNPEF
NGFVGLSYYK REQDFSSSGG VTYVGDDSSS SHSIYGEVSY ALTEQWKIIA GGRVEKEQQI
RNFAMSTRGR VVADKLDDDH NIALPKLVLQ YALNQDTTLA VSARSGYNAG GGALSFADNA
YYYYEKETVD TFELSSRSSF DDGNINISSN VFYNNFDGYQ ASNNERKITN IDEAVTYGLE
LEAGVMLNDD WQLNSGLGLL KSEIKAASPS YGDIIGNELN SAPKITANIG LKYWVNDELT
LGLSGNYVGE YYADINNTTE RVAGDYVVSR LNLDYQNDQW RVSGFVNNLF DEQALTVNEP
ANRSYPQGYA AIIEPRAFGV SVTYSF
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