| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0160 |
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| Symbol | rplA |
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| ID | 4017824 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 180949 |
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| End bp | 181650 |
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| Gene Length | 702 bp |
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| Protein Length | 233 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637954136 |
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| Product | 50S ribosomal protein L1 |
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| Protein accession | YP_561180 |
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| Protein GI | 91791529 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0081] Ribosomal protein L1 |
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| TIGRFAM ID | [TIGR01169] ribosomal protein L1, bacterial/chloroplast |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000000041056 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCAAAGC TAACTAAGCG TATGCGTGTA ATCCGCGACA AAGTGGATGG AATGAAGAGC
TACGATATAA ACGAAGCTGT GGCACTATTA AAAGAATTGG CTACTGCTAA ATTCGTTGAA
AGTGTTGATG TTGCTGTGAA TCTTGGTATT GACCCACGTA AATCTGATCA AAACGTGCGT
GGTGCTACTG TACTTCCACA CGGTACTGGT CGTGATGTTC GTGTTGCTGT GTTCACACAG
GGTGCCAATG CCGAAGCTGC AAAAGCTGCT GGCGCTGAAC TTGTAGGTAT GGAAGAACTG
GCTGAGCAAA TCAAAGCCGG TGAAATGAAC TTTGACGTTG TTATCGCATC TCCAGATGCA
ATGCGCGTTG TTGGTATGTT AGGTCAAATC TTAGGCCCAC GTGGTTTAAT GCCTAACCCT
AAGACTGGCA CAGTAACGCC AAACGTTGCT GAAGCAGTTA AGAATGCCAA AGCCGGTCAA
GTTCGTTACA GAAATGACAA GAACGGTATT ATCCACACTA CTATCGGTAA AGTGGATTTC
ACGACTGAAC AGTTGAAAGA AAACTTAGAA GCTTTAGTGT CAGCACTGAA GAAAGCTAAG
CCAGCTGTTG CAAAAGGCGT TTTCGTGAAG AAAATTAGCA TCTCTACCAC TATGGGTGCA
GGTGTTGCGG TTGATCAGGC TACGCTTGAA ACTGCTAACT AA
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| Protein sequence | MAKLTKRMRV IRDKVDGMKS YDINEAVALL KELATAKFVE SVDVAVNLGI DPRKSDQNVR
GATVLPHGTG RDVRVAVFTQ GANAEAAKAA GAELVGMEEL AEQIKAGEMN FDVVIASPDA
MRVVGMLGQI LGPRGLMPNP KTGTVTPNVA EAVKNAKAGQ VRYRNDKNGI IHTTIGKVDF
TTEQLKENLE ALVSALKKAK PAVAKGVFVK KISISTTMGA GVAVDQATLE TAN
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