| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0042 |
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| Symbol | |
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| ID | 4017241 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 54915 |
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| End bp | 55700 |
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| Gene Length | 786 bp |
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| Protein Length | 261 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 637954015 |
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| Product | type III secretion system inner membrane R protein |
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| Protein accession | YP_561062 |
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| Protein GI | 91791411 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCATTAC GACTATTAGC AAAATTGCTG AGTTTTAGGG ATATGGAACA GTATTTAAAA
GTACTTGGCC TATTTTACTG CAGAGTTGGT ATTGTGTTTT GGTTGCCTTT AGTTGGCCCT
ATGTCCAGGA TACCTACTAG CATCCGCTTT ATCATAGTTA ATGTGATCGT TATCGCGTTG
TTTTCTCTAC AGGGAGCGCC AGCAGTCATA GAGGTAGATT TAAATACCCG CTCATATTTG
ACCCTGCTGG CAATCGAGTT TATCACTGGC ATTACTTTTT CTCTTATATT GGCAGTCCCG
GCCGTGGTGT TGCTTTTTTT TGGTCGCGCG ATTGATATGC AAATTGGTCT CGGTGCTTCA
GGGATTTTCA ATCCAACAAG CCAAACTCAA GATTCGCTTC TTGGGGTGTT ATTTTCATTT
GCAGCATTGA CATTATTTTG GTCTCTGGGC TTGCATTTGG ATGTACTTAA AATTCTGATA
GAAAGTATTA AAGTACTGCC TCTTGGTCAA ACGAGAAATG TAGAAGCAAT GGTTTTTATT
GAATACTTTT CTACAGCATT CGTACTTGGT TTGATCCTTT TTGCCCCCGT GATCATTATG
CTTTTTATTG TGGATATTTG TTCCGGGATC ATTTCTAAAA GCATGCCGCA GATGAGTATT
TATTTTGTCA TTATGCCATT GAAAATAATG ATAGGTTTTA TTGTCTTGAC CATCACGTTA
ACGAATTTAG CTTCGCATTT TGAAATGCTA GTTAGGTTTC CTGTTAAATT TTTGGTAGGG
CTTTAG
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| Protein sequence | MPLRLLAKLL SFRDMEQYLK VLGLFYCRVG IVFWLPLVGP MSRIPTSIRF IIVNVIVIAL
FSLQGAPAVI EVDLNTRSYL TLLAIEFITG ITFSLILAVP AVVLLFFGRA IDMQIGLGAS
GIFNPTSQTQ DSLLGVLFSF AALTLFWSLG LHLDVLKILI ESIKVLPLGQ TRNVEAMVFI
EYFSTAFVLG LILFAPVIIM LFIVDICSGI ISKSMPQMSI YFVIMPLKIM IGFIVLTITL
TNLASHFEML VRFPVKFLVG L
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