Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bxe_A1963 |
Symbol | |
ID | 4002933 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia xenovorans LB400 |
Kingdom | Bacteria |
Replicon accession | NC_007951 |
Strand | - |
Start bp | 2759137 |
End bp | 2761482 |
Gene Length | 2346 bp |
Protein Length | 781 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 637947673 |
Product | YD repeat-containing protein |
Protein accession | YP_559054 |
Protein GI | 91783848 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3209] Rhs family protein |
TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0257216 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.00891251 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAAAAGAC ACAGACTGTA TGGAGATGCG TCCGGATTTT CGGGCCGCCT AATGGCTGCG TTCATGTTGC TGATACTTGC GTTCAGCGCA AATGCAGACG ACTGCTTCTC ACTGTACGCG AAGTCCGGCG CCACGCCGGG CTCCAAGACC TGCAAGCTCG ACGTTACGAG CAACACGCCG GGTGGTATGG GCAACTACGC GTGTATTAAT GACCTCGTGC AGATTGATCA GTGGTGTAAT TCAACCGGCA CTCCGCCGGA CGATACCTGC CCGGTGGCTG ACCCGGTGTT TCCCGCGAAC GGGATTGTGA CTCTCTCTGA AACTGATTTT GCAAGCGGCG ACACGTCGCC GCTTGTGTTC AGTCGTAGCT ACCTGTCCAA GCCGTTCGAT AAAGTGCAGA CAGCGATGGG CGGGTACTGG GCAAGTAACT GGCAGCGACG GCTTGATCTG ACCTCGGTCA ATGCAAGTAC GCCGAAAATC ACCGCGTATC GGAGTAACGG CCAGCCTCTG ATCTTCAAGT GGGTTAACGG CGGGTGGGCG GTGCCGGGTA CGTCGGGTCT TTCTCTCTTG AAAGCTGGCG ACGGATACTT CTACCTGAAG GACGAACGGC TTGGCACGAC CGAAACATAC TCCGTCAGCA CAGGTCTGTT TCACTCCGAG ACAACACGCA CGGGTATGTA TCGTGAAGTT GAATACGTTG GACAACAGAT AGATTCGATC GCGCAGTGGC CCGTTGATCG GATCGGGCAG ACGGCATCGC GGCTGACACT TAGTCTGACA TATGACAGTA ATGGTCGCGT TGTGAGTGTA GTGCCGCCTT CGGGCAACGC GACACATTAT GCGTACGATG CGAAAGGCAA TCTTGTTTCA GTAACCGCGC CGATTGGATA CGTTCGTCAG TACCTTTATG AGGATGCCCG CTTCCCCAAT GCGATGACCG GGATAAAGGA CGAATCCGGT TCACGGATTG CAACATGGAC CTACGATTCC AGCGGACGCG CAATCTCAGT CACCCATCCG GACACGACGC GTAACGTTTC TTTCAGTTAT GGCGCGAACA CGACCACTGT TAGCAATATG TCCGGCAACA GCACGTATTC TTTTAATGTT GGAGACACGT CGCGTCCTGG CTCAATTGTT ACGCCTGGCG GCGCGGTCTC ACGTACATGG GATACATCAG GGAACCTGAA GCAGACAATT ACACCGGATG GGAATACACA GTACACGTGG GACGGCGCCA ACCGGCCGAC GAAAGCAGTT GCGACAGTCT CTGGCAACAG GACGGTAACG ACGATCGAGT ATAGCGACAG TACCTCGTTG CGTCCGCATC TGGTCGCCAC GCCGGGTAAA ATCCGCGCGT TTGTCTATGA CCAGGGCGGT AACGTCACTG GCTACGCCGA GACGGAGACG ACCGATCTGA CGGGCGAACA GGGGATGCAA GCCGTTGGGA CCGGTAACCA GTGGACAGTT GGTGCAAGCT ACGATTCGGC GAGCCGCCTT CTGTCGGCTG TCATCACACG TAATGGCTCG AAGCGTGAAG ACTGGACCTA CACATACGAT GTACGGGGCA ATGTCGAGTC AGTGCAGGAT GCCGTATCTG GCTGGTCGAT GCGAACGCTC TCGCGCAATG CTGAGAATCG TGCAACGCAG ATAGCTGGAA ACAGCGGTCA GGCGAGCATC GGGTACGATG AGCGCGGTCG CGTAAAGTCC TTTCAGTATA GCGAACCGGC AAGTTCGTTA AATGGTGGAC TTGCCCGTGT ACTGGCAGTC GATTACCGGT ATGGTCCAGA CGGTACGGTG TCCTCGTACA CTGCTCAGGT GTCGACGAAC GGCGCCTGGT GGCAGCCGAT CAGCGATGCC GAACTGGGAG TGTGGCTCAC CAACTGGGAA CTGGGAAATG ATCCGGTTGC ACCCCCGGCG AGCCTCACCG GCCTGCAATC CAATGGCAGA GCCTTCGTTC CAGAAATCTG CGTTGAATGC TACATGGCCT GGAAGGCGTT GCCGACAGGT AAGCTATTCG GCCAGGAATT GGGCGAAACA CTGCCGGCAT GGCGCGAAAC CACCGAGTTG ATGCTGAGCG ATCAGGCGCA GGTTCCATAT CCTTCGCTCG TGCCCGATCT GACGAGTTCT GCGAAGCGGT CAACGCTTTA CAGCAGCCTG TTCAAGGGGG GGGATGGTGG ATTCGCTAAA TGCGGCGGTA GAGAAGCTCA CGAGGCCGAA TGCTATGCTC AGTATGAAAA CGACAGAGAC GAATGCCGTC TCCTGGCCGG ACCAAGAGGG AAGCGAAACT GGGCCCTATG CTTGGCGAAC GCTTTTGACA GATATCAACA ATGCAGGGGG TATTGA
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Protein sequence | MKRHRLYGDA SGFSGRLMAA FMLLILAFSA NADDCFSLYA KSGATPGSKT CKLDVTSNTP GGMGNYACIN DLVQIDQWCN STGTPPDDTC PVADPVFPAN GIVTLSETDF ASGDTSPLVF SRSYLSKPFD KVQTAMGGYW ASNWQRRLDL TSVNASTPKI TAYRSNGQPL IFKWVNGGWA VPGTSGLSLL KAGDGYFYLK DERLGTTETY SVSTGLFHSE TTRTGMYREV EYVGQQIDSI AQWPVDRIGQ TASRLTLSLT YDSNGRVVSV VPPSGNATHY AYDAKGNLVS VTAPIGYVRQ YLYEDARFPN AMTGIKDESG SRIATWTYDS SGRAISVTHP DTTRNVSFSY GANTTTVSNM SGNSTYSFNV GDTSRPGSIV TPGGAVSRTW DTSGNLKQTI TPDGNTQYTW DGANRPTKAV ATVSGNRTVT TIEYSDSTSL RPHLVATPGK IRAFVYDQGG NVTGYAETET TDLTGEQGMQ AVGTGNQWTV GASYDSASRL LSAVITRNGS KREDWTYTYD VRGNVESVQD AVSGWSMRTL SRNAENRATQ IAGNSGQASI GYDERGRVKS FQYSEPASSL NGGLARVLAV DYRYGPDGTV SSYTAQVSTN GAWWQPISDA ELGVWLTNWE LGNDPVAPPA SLTGLQSNGR AFVPEICVEC YMAWKALPTG KLFGQELGET LPAWRETTEL MLSDQAQVPY PSLVPDLTSS AKRSTLYSSL FKGGDGGFAK CGGREAHEAE CYAQYENDRD ECRLLAGPRG KRNWALCLAN AFDRYQQCRG Y
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