Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bpro_5443 |
Symbol | |
ID | 4016402 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas sp. JS666 |
Kingdom | Bacteria |
Replicon accession | NC_007950 |
Strand | - |
Start bp | 195425 |
End bp | 196534 |
Gene Length | 1110 bp |
Protein Length | 369 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 637945063 |
Product | type II secretion system protein E |
Protein accession | YP_552195 |
Protein GI | 91791245 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.00200172 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.203464 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGATCACG ATATTCCTAC AGATACCGCT GCCGCCGCGG CCACAATTCG AGCAATTCTC ACCGTGGTCG ACAGCAAAAT GCCTTTTAGC GACATTCTTG TGGCTGCTGA TGAACCCGTT ATGCTTCGCA ACGCCAGCGG ATGGACCCCG TTCCCTGACA GTGCGTATTC CAATGACGAT ATCGAGTTCA TTCTGACTTC CATGGAGCCA GACTGGTCGA CCCACCTTAT TAATGGTGGC TTCAGCCGTC CGTATCTGGT TGGCGATTGG CGCTTGCGCG TGACTGCGTA CTTGGCCGGC CGCGGTAATA AGAAAATGCT CTCCATACGG AGAACACCTG TAGTCCCCAT GCCGCTTGAA AAGACGGGTC TTTCCCCGTC CGTGAAGTTG ATGGTGGAGA ACCCTAAGGG TTTGATCTTG CTTTCCGGGC CCACTGGCTC CGGCAAGACA ACCACCATGG CTGCGCTCAT CGACTACATC AACACCACTA GAAACGCTCA TGTGGTTACG ATCGAAGATC CGATTGAATA CGAGTTCGTT CGCAACAATT CGGTTTTTTC ACAGCGCGAA GTTGGTGTCG ATACACCATC TTTTTTTGAG GGCGTTCGTG GGGCAATGCG TCAACGGCCG GACGTGATCG TCATCGGTGA AATTCGTGAC CGAGATACAG CTGAAAATGC AATTCTCGCC GGTGAATCTG GACATCTCGT GATAGCAACC CTGCACGCCA GTTCTGCCTA TGGGGCAGTG CAGAAACTGG TCTCTTTTTT CCCTGGCGAA GAATTGGCCA GGACTGCCAG CCTGGCCACC TCCTTAATGG GCGTTGTGCA CCATGCAATC GTCCCCACGG TCGATAAATT GACCGGCGTA TTGGCCTCCG AGCTCCTGTT CAACCATCAT CAAGCGTTTT CAACAATCCT TGCCGATTCG CACAAAGTAC AGATGGAGCT TGAGGATCCG AAAGACAAGA TTTCCCGTTC CATGGCCGCA AGCCTGGTTG ATTTGGTCAA GGCGGCAAAG ATTTCCAAAT CTGAAGCGTT GAGAAGCGTT GCGGGGCAGG GTGCGGTCTG GAAGCAAGTG AACGAGCGTT TGAATACCGT AAAGGCGTGA
|
Protein sequence | MDHDIPTDTA AAAATIRAIL TVVDSKMPFS DILVAADEPV MLRNASGWTP FPDSAYSNDD IEFILTSMEP DWSTHLINGG FSRPYLVGDW RLRVTAYLAG RGNKKMLSIR RTPVVPMPLE KTGLSPSVKL MVENPKGLIL LSGPTGSGKT TTMAALIDYI NTTRNAHVVT IEDPIEYEFV RNNSVFSQRE VGVDTPSFFE GVRGAMRQRP DVIVIGEIRD RDTAENAILA GESGHLVIAT LHASSAYGAV QKLVSFFPGE ELARTASLAT SLMGVVHHAI VPTVDKLTGV LASELLFNHH QAFSTILADS HKVQMELEDP KDKISRSMAA SLVDLVKAAK ISKSEALRSV AGQGAVWKQV NERLNTVKA
|
| |