| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_5118 |
|---|
| Symbol | |
|---|
| ID | 4016079 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007949 |
|---|
| Strand | + |
|---|
| Start bp | 230229 |
|---|
| End bp | 231377 |
|---|
| Gene Length | 1149 bp |
|---|
| Protein Length | 382 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637944751 |
|---|
| Product | mandelate racemase/muconate lactonizing enzyme |
|---|
| Protein accession | YP_551883 |
|---|
| Protein GI | 91790932 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
|---|
| COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.808237 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.197598 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCA CAAAAATCAA CGCGATCCCC TTGTCCTACC GCTTGCCCGA GGGCAAGACC
GTCACGATGG GGGTTGGCAG CACGATAAAG CGCGATGCCA TCATCATCCG TGTGGAGACT
TCTGAAGGAA TCACCGGCTA TGGCGAAGCC CATCCCGGCC GCAGCCCGGG GGCCATCACC
AGCCTGATCC ACAATACGAT CGCGCCGATG CTGATCGGCA TGAAAGCGAC CGACTGCGTG
GGTGCGTGGC AACGCGTGCA CCGCATGCAA CTCTCCAGTC ATGGGCTGGG TGCCGGTGCT
GCGCTGGCAA TTTCCGGCAT AGACATGGCC CTGTGGGACA TCCGCGGCAA GGCGGCCAAC
ATGCCCCTGT ATGAGCTGTT GGGTGGCAGC AAGCGACGCA TCCCGGCCTA TGCGGGCGGC
ATTGCACTTG GCTATCAGCC CAAGGAGTCA CTGGCGGAAG AGGCACAGGA ATACATCGCC
CGCGGCTACA AAGCCCTGAA GCTGCGCATC GGGGATGCCG CCAGAGTGGA TATCGAACGC
GTGCGCCATG TGCGCAAGGT ATTGGGCGAC GAGGTCGACA TCCTGACCGA TGCGAACACG
GCCTACACGA TGGCTGATGC ACGCCGCGTG TTGCCGGTGC TTGCCGAAAT CCAGGCGGGC
TGGCTGGAAG AGCCGTTCGC CTGCAACGAC TTCGCTTCGT ATAGGGAAGT GGCCAAGATC
ACGCCGCTGG TGCCGATTGC GGCGGGAGAA AATCACTACA CCCGCTTCGA ATTCGGACAA
ATGCTCGATG CTGGTGCGGT CCAGGTCTGG CAACCCGATC TGTCCAAGTG CGGAGGCATC
ACGGAAGGTA TCCGCATCGC CGCCATGGCC TCGGCCTACC GCATTCCGAT TAATGCCCAC
AGCTCGGCGA CCGGTCTGAA CCATGCGGCA ACGATTCACT TTTTGGCCGC CACCGAAAAC
GCCGGCTACT TCGAAGCCTG CGTCTCGAAA TTCAATCCAT TCCGCGACAT GTTTGGCACC
TCGTTCGAGA TCGGTGCCGA TGGCTGTGTC GAGCCGCCGG ATGCGCCGGG CTTGGGCATT
GAAGTGGACG AATCCATTTT CGAAAAGTAT CCGGCTGTCG ATGGCCCGGG TTATGTAGTG
AAGTTCTAA
|
|---|
| Protein sequence | MKITKINAIP LSYRLPEGKT VTMGVGSTIK RDAIIIRVET SEGITGYGEA HPGRSPGAIT
SLIHNTIAPM LIGMKATDCV GAWQRVHRMQ LSSHGLGAGA ALAISGIDMA LWDIRGKAAN
MPLYELLGGS KRRIPAYAGG IALGYQPKES LAEEAQEYIA RGYKALKLRI GDAARVDIER
VRHVRKVLGD EVDILTDANT AYTMADARRV LPVLAEIQAG WLEEPFACND FASYREVAKI
TPLVPIAAGE NHYTRFEFGQ MLDAGAVQVW QPDLSKCGGI TEGIRIAAMA SAYRIPINAH
SSATGLNHAA TIHFLAATEN AGYFEACVSK FNPFRDMFGT SFEIGADGCV EPPDAPGLGI
EVDESIFEKY PAVDGPGYVV KF
|
|---|
| |