Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bpro_4064 |
Symbol | |
ID | 4013275 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas sp. JS666 |
Kingdom | Bacteria |
Replicon accession | NC_007948 |
Strand | - |
Start bp | 4272521 |
End bp | 4273726 |
Gene Length | 1206 bp |
Protein Length | 401 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637943712 |
Product | extracellular ligand-binding receptor |
Protein accession | YP_550855 |
Protein GI | 91789903 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00184477 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.421947 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACATGC AACACAAAAT ACTGAGCGCC GTGACCTGTC TTGGTCTGAT GGCCTCGCTG GTGACCGCTC AGGCACAAGA CGTCATCAAG ATTGGCGAGA TCAACAGCTA CAAGGCCCAG CCGGCCTTTC TGGAGCCCTA CAAGAAAGGC ATGGAGCTGG CTGTCGAGGA AATCAACGCC TCCGGCGGCG TCAACGGCAA GAAGGTGCAG CTGATCATCC GGGACGACAA CGCCAATCCG GGTGACGCGG TGCGTGCGGC CGAGGAACTT GTCTCACGTG AGAAGGTGGA TGTGCTGACC GGCTCCTTCC TGTCCCACAT TGGCCTGGCG CTGACGGACT TTGCCAAACA GAAGAAGTTT TTCTTCCTGG CCGCGGAACC GCTGACCGAC AAAATTGTCT GGCAAAACGG CAACCGCTAT ACCTTCCGCC TGCGCACCTC GACTTATATG CAGGTGGCCA TGCTGGTTCC GGAAGCTGCG GCAATGAAGA AAAAGCGCTG GGCGGTGGTG TACCCCAACT ATGAGTACGG CCAGTCCGCA GCGGCCACCT TCAAAACGCT GCTGAAGGCG GCCCAGCCCG ATGTGGAGTT CGTCGCCGAG CAGGCGCCAC CCCTGGGCAA GGTCGATTCC GGCAGCGTGG TGCAGGCCCT CGCTGACGCC AAACCTGATG CCATCTTCAA CGTGCTGTTT GGTGCCGATC TGTCGAAGTT CGTTCGCGAA GGCAACACCC GTGGCCTGTT CCAGGGCCGT GAAGTCGTGA GTCTGCTGAC CGGCGAGCCC GAGTACCTTG ATCCTCTGAA GGACGAAACG CCCAATGGCT GGGTCGTCAC CGGTTACCCC TGGTACGGCA TCCAGACGCC GGAGCACAAG GCATTCTTTC TGGCTTACCA CGGGAAATAC AAAGACTATC CCCGCCTGGG CTCCGTCGTT GGGTACAGCG CCATCAAGTC CCTGGCCGAA GGCATGAAAA AAGCCAGGTC GACCGACACG GAAAAGCTGA TTGCAGCCTT CAGCGGCCTG CAGGTGAAAA CGCCCTTCGG CCCTGTGGTT TACCGTCCGG AAGATCACCA GTCCACCATG GGCATCTATG TCGGGCGCAC CAAAAACGAA GGGGGAAAAG GCGTGATGGT CGACTACCGC TACATGGACG GTGCGAAGTT TCAGCCTGGC AACGCAGAAG TGAAGAAGTT GCGCGCCGCT GACTAA
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Protein sequence | MNMQHKILSA VTCLGLMASL VTAQAQDVIK IGEINSYKAQ PAFLEPYKKG MELAVEEINA SGGVNGKKVQ LIIRDDNANP GDAVRAAEEL VSREKVDVLT GSFLSHIGLA LTDFAKQKKF FFLAAEPLTD KIVWQNGNRY TFRLRTSTYM QVAMLVPEAA AMKKKRWAVV YPNYEYGQSA AATFKTLLKA AQPDVEFVAE QAPPLGKVDS GSVVQALADA KPDAIFNVLF GADLSKFVRE GNTRGLFQGR EVVSLLTGEP EYLDPLKDET PNGWVVTGYP WYGIQTPEHK AFFLAYHGKY KDYPRLGSVV GYSAIKSLAE GMKKARSTDT EKLIAAFSGL QVKTPFGPVV YRPEDHQSTM GIYVGRTKNE GGKGVMVDYR YMDGAKFQPG NAEVKKLRAA D
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