| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3901 |
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| Symbol | |
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| ID | 3969264 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 4330954 |
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| End bp | 4331922 |
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| Gene Length | 969 bp |
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| Protein Length | 322 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637927004 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_533746 |
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| Protein GI | 90425376 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | [TIGR02782] P-type conjugative transfer ATPase TrbB |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.23127 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGGCAATCC ATCATCTCAA TCACGAGGCG ACATCGCGTG GCGCGCGCAT GCTGCGGACC
GCATTGGGTC CGTCGATCGC GCTTTGGCTG GAAGATGCTG AAGTCGTTGA GGTGATGCTC
AACCCGGATG GCCGGCTCTG GATCGACCGG CTGGCAGTTG GACTTGTCGA TACCGGGGAA
CGGTTGTCGG CCCGCGATGG CGAGCGGATC GTCCGTCTCG TCGCGCACCA CGTCGGCGTG
GAGGTGCATT CGGCTTCACC GCGCGTCTCG GCAGAGTTGC CGGAAACCGG CGAGCGTTTC
GAGGGATTGC TCCCGCCAGT CGTCGCTGCA CCAACCTTTG CGATCCGCAA GCCCGCGGTC
GCGGTCTTCA CGCTCGACGA CTACGCCGCA GCCGGAATCA TGACGGCGTG TCAGGCCGAG
ACCCTGCGCG CGGCCGTCGC GGAGCGCCGT AACATTCTGG TCGCGGGTGG CACCTCGACC
GGCAAAACCA CGCTGACCAA TGCGCTGCTG GCGGAAGTTG CCAAGACGTC CGATCGCGTG
GTGCTGATCG AGGATACCCG CGAGCTGCAA TGCCAGGCGC CGAATTTCGT CGCGCTACGC
ACCAAGGACG GCGTGGCCTC GTTGTCGGAC CTGGTTCGGT CATCGCTGCG GCTTCGGCCC
GACCGTATCC CGATCGGTGA GGTGAGGGGT GCCGAGGCGC TCGACCTGTT GAAGGCCTGG
GGCACCGGCC ACCCGGGCGG CATCGGTACC ATCCATGCAG GCACCGCGCT CGGCGCGCTG
CGCCGGATGG AGCAACTGAT CCAGGAAGCC GTCGTCACCG TGCCGCGCGC GCTGATCGCC
GAGACCATTC AACTCGCCGC CGTGCTGGCC GGACGCGGTT CCGATCGCCG CCTGACTGAG
CTCGCTCAGG TCGAGGGCCT CGGCCCTGAC GGCGATTACG TGCTCAAAGC CGCAGGAGAT
CAGCCATGA
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| Protein sequence | MAIHHLNHEA TSRGARMLRT ALGPSIALWL EDAEVVEVML NPDGRLWIDR LAVGLVDTGE
RLSARDGERI VRLVAHHVGV EVHSASPRVS AELPETGERF EGLLPPVVAA PTFAIRKPAV
AVFTLDDYAA AGIMTACQAE TLRAAVAERR NILVAGGTST GKTTLTNALL AEVAKTSDRV
VLIEDTRELQ CQAPNFVALR TKDGVASLSD LVRSSLRLRP DRIPIGEVRG AEALDLLKAW
GTGHPGGIGT IHAGTALGAL RRMEQLIQEA VVTVPRALIA ETIQLAAVLA GRGSDRRLTE
LAQVEGLGPD GDYVLKAAGD QP
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