Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_1729 |
Symbol | |
ID | 3972441 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | + |
Start bp | 1878940 |
End bp | 1880112 |
Gene Length | 1173 bp |
Protein Length | 390 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637924842 |
Product | peptidase M20D, amidohydrolase |
Protein accession | YP_531607 |
Protein GI | 90423237 |
COG category | [R] General function prediction only |
COG ID | [COG1473] Metal-dependent amidase/aminoacylase/carboxypeptidase |
TIGRFAM ID | [TIGR01891] amidohydrolase |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0022862 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGCCCGTGA TCAACCGCGT CGCCGATCTG CAGCCTGACA TCGTGGCCTG GCGCCGGGAT CTTCATGCGC ATCCGGAACT GATGTACGAG GTGCATCGCA CCGCGGCCTT CGTGGCGGAC CGGCTGCGCG AATTCGGCTG TGACGAGGTC GTCACCGGCA TCGGCCGCAC CGGCGTGGTC GGCGTGATCA AGGGCCGCAA GCCGGCTGAC GGCAGCGAGG TTCGCACCAT CGCGCTGCGC GCCGACATGG ACGCTCTGCC GATCACCGAA GCCAACGATC TGCCCTACGC CTCGCAGACG CCCGGGCTGA TGCACGCCTG CGGCCATGAC GGCCACACCG CGATGTTGCT CGGCGCCGCG CGCTATCTCG CCGAGACCCG CAATTTTGCC GGCGACGCCG TGGTGATTTT CCAGCCGGCC GAGGAGGGCG GCGCCGGCGC CGCGGCGATG ATCGCGGACG GGTTGATGGA GCGCTTCGCG ATCGACCAGG TCTACGGTAT GCACAACGGC CCCGGCCTGC CGGTCGGCTG CTTCGCGCTG CGGCAGGGAC CGATCATGGC TTCGACGGAT TCCATCGACA TCAAGATCAA TGGCGTCGGC GGCCACGCCG CGCGGCCGCA CAAATGCGTC GATTCGGTGC TGGTCGGCGC GCAGCTGGTC ACCGCGCTGC AATCGATCGT GTCGCGTAGC GTCGATCCGC TGGAGTCCGC GGTGCTGTCG ATCTGCGAGT TCCACGCCGG CAATGCCCGC AACGTGATTC CGGCGTCCGC GGAGCTGAAG GGCACCGTGC GTACGCTCAC TGCGGACGTC CGCGACCTCG CCGAACAGCG GGTGCGCGAG GTGGTGGCTG GCGTCGCCAC GATGACCGGC GCCACCATCG ATTTGGTCTA TGATCGCGGC TACCCAGTGC TGGTCAACCA CGCGGCGCAG ACCGAAGCGG CCAGCCGCGT CGCCCGCGCC ATCGCTGGCG ACGGCAACGT CCACGACATG CCGCCGCTGA TGGGCGCCGA GGATTTTGCC TATATGCTGG AAGCCCGCCC GGGCGCCTTC ATCTTCGTCG GCAATGGCGA CAGCGCCGGG CTGCATCACC CGGCCTACAA TTTCAATGAC GACGCCATCG TCTATGGAAC ATCCTATTGG ATCAAGCTGG TCGAGACCAC GCTGGCGGCC TGA
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Protein sequence | MPVINRVADL QPDIVAWRRD LHAHPELMYE VHRTAAFVAD RLREFGCDEV VTGIGRTGVV GVIKGRKPAD GSEVRTIALR ADMDALPITE ANDLPYASQT PGLMHACGHD GHTAMLLGAA RYLAETRNFA GDAVVIFQPA EEGGAGAAAM IADGLMERFA IDQVYGMHNG PGLPVGCFAL RQGPIMASTD SIDIKINGVG GHAARPHKCV DSVLVGAQLV TALQSIVSRS VDPLESAVLS ICEFHAGNAR NVIPASAELK GTVRTLTADV RDLAEQRVRE VVAGVATMTG ATIDLVYDRG YPVLVNHAAQ TEAASRVARA IAGDGNVHDM PPLMGAEDFA YMLEARPGAF IFVGNGDSAG LHHPAYNFND DAIVYGTSYW IKLVETTLAA
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