| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1436 |
|---|
| Symbol | |
|---|
| ID | 3973704 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 1561196 |
|---|
| End bp | 1562725 |
|---|
| Gene Length | 1530 bp |
|---|
| Protein Length | 509 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637924551 |
|---|
| Product | integral membrane protein MviN |
|---|
| Protein accession | YP_531317 |
|---|
| Protein GI | 90422947 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0728] Uncharacterized membrane protein, putative virulence factor |
|---|
| TIGRFAM ID | [TIGR01695] integral membrane protein MviN |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCAGGC GTATCTTCAC CGTCGGCGGC TTTACCCTGT TGTCGCGGCT CACCGGCTTC
GCGCGCGATA TCATGCTGGC GGCGATTCTC GGCGCCGGGC CGATCGCCGA CGCGTTCTTC
GTGGCGCTGC GGCTGCCCAA TCATTTCCGC GCGATCTTCG CCGAGGGCGC CTTCAACGCC
GCCTTCGTGC CGGCCTATGC GCATGTCCGC GGCGAACGCG GCGAGATTTC GGCGCGGCTG
TTCGCCGACC GCATCTTCAC GCTGCTGTTC GCGTCGCAGT TGCTGCTGCT GGTGATAGCG
CTGTTCTTTA TGCCGCAGAT GATGAGCATC CTGGCGCCGG GGTTCTCCGA CGATCCGGCG
CAGCGGGCAC TGGCGATCGA TCTGACCCGG ATCACCTTTC CCTATCTGTT GCTGATCACG
CTGGTGACGC TGTATGGCGG CATGCTCAAC GTGATGCAGC GCTTTGCCTC CGCGGCCGCC
GCCTCGATCT TTCTCAACAT CTCGATGATG GCGACGCTGG CGCTGGCGGC GTTATTTCCC
AGCGCCGGCC ACGCCGCCGC CTGGGGCGTG CTGATCTCCG GCTTCCTGCA ATATGTCCTG
CTGGCCGGCG ATCTGTCGCG GCATGGCGGG TTGCCGCGGT TTGCGATGCC GAAGCTCGAT
CTCGACGTCC GCGGCTTTTT CCGCGCGCTG GGGCCGGCGA CGCTGGGCTC GATGGGCACG
CAAGTCGCAC TGTTCGCCGA CACCATCATC GCCACATTTC TACCGGCCGG CGCGCTGTCG
GCGCTGTACT ACGCCGACCG GCTCAATCAG CTGCCGATTG GGGTGATCGG CATTGCCATC
GGCACCGTGC TGCTGCCGGA AATGTCGCGG CAGCTGACCT CCGGCGACGA CGTCGGCGCC
AAGGCGTCGC AGCGCCGCGC CTTCGAATTC ACGCTGCTGT TCTCGGTGCC GTTCGTGGCG
GCGTTCCTCA CCGTGCCGGA CGTCATCATG CGGGCGATGT TTGCGCGCGG CGCCTTTACC
AAGGCGGACG CGGTGGCGGC CGGCGCGACG CTGGCTGCGT ATGCCATCGC GCTGGTGCCG
TTCGTGCTGA TCCGCAGCGC GGTGGCGCCG TTCTACGCCC GCAAGGACAC CGCGACCCCG
ATGAAGGCGG CGCTGACCGG GATCGCAGTC AACGTCGCGC TGAAGGTGGC GCTGGTCGGC
GCGCTGGCGC AGGTTGGCCT CGCGCTGGCC ACCGCGGTCG GCGCCTGGAT TAATCTGTTG
CTGGTGATCG GCTTCGCGGT GCGCGCCGGC TATCTCGAGA TCGACCGCGC GCTGACGCTG
GCGATCGCCA AGTTTGTCGC CGTGGGCCTG CTGCTTGGTG CCGCGTTGTG GGCGACCGCG
CGGTACGCCG CGCCTTATCT GGCGCAGCTC AGCGCGCTGC GCGACGAGGC CGCGCTGGCG
CTGTTGATCG GCGTCGGCGC GCTGGTCTAT GGCGCGGCGA TTCTGTTGCT GTTCGGCACC
CGCTGGCTGC GCGCGCTGCT GCGCGGCTGA
|
|---|
| Protein sequence | MLRRIFTVGG FTLLSRLTGF ARDIMLAAIL GAGPIADAFF VALRLPNHFR AIFAEGAFNA
AFVPAYAHVR GERGEISARL FADRIFTLLF ASQLLLLVIA LFFMPQMMSI LAPGFSDDPA
QRALAIDLTR ITFPYLLLIT LVTLYGGMLN VMQRFASAAA ASIFLNISMM ATLALAALFP
SAGHAAAWGV LISGFLQYVL LAGDLSRHGG LPRFAMPKLD LDVRGFFRAL GPATLGSMGT
QVALFADTII ATFLPAGALS ALYYADRLNQ LPIGVIGIAI GTVLLPEMSR QLTSGDDVGA
KASQRRAFEF TLLFSVPFVA AFLTVPDVIM RAMFARGAFT KADAVAAGAT LAAYAIALVP
FVLIRSAVAP FYARKDTATP MKAALTGIAV NVALKVALVG ALAQVGLALA TAVGAWINLL
LVIGFAVRAG YLEIDRALTL AIAKFVAVGL LLGAALWATA RYAAPYLAQL SALRDEAALA
LLIGVGALVY GAAILLLFGT RWLRALLRG
|
|---|
| |