Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_0213 |
Symbol | |
ID | 3971162 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | + |
Start bp | 231543 |
End bp | 232265 |
Gene Length | 723 bp |
Protein Length | 240 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637923326 |
Product | pseudouridine synthase |
Protein accession | YP_530107 |
Protein GI | 90421737 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.0138576 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGAAA GTCACCCTGA ACCAACGGCT ATGCCGGAAC TGACCGCGGA GGAGATCCTG GCGCGGGTGC TGTACCGCGA CGGGCTGATG CTGGTGATCG ACAAGCCCGC CGGGCTGCCG GTGCACCGCG GCCCGAAGGG CGGCGCCAAC CTAGAATCCT CGTTCGAGTT CCTGCGCTAC GGGCTGCCGC GGCCGCCGGT GTTGGCGCAT CGGCTGGACC GCGACACCTC GGGCTGCCTG GTGCTGGGGC GCCACCGCAA GGCCACCGCG TCGCTGGGGT TGTTGTTCAA GCACGGGCGG ATTTCCAAGA CCTATTGGGC AGTGGTCGAA GGCGGCCCGA TCGAGGACGA AGGCACCATT GAATTGCCGA TCGGCCGGCT CAACGCCGAG CGCGGCTGGT GGCAGAAGAT CGATCCGGAG GGCCAGCCCG CCACCACCAA ATGGCGGGTG CTGGGCCGCG GCGACGGCCT CACCTGGCTG GCGCTGCAGC CGGTGACCGG GCGGACGCAT CAGCTGCGGG TGCATAGCGC CGCGATGGGC TGGCCGATCG TCGGCGACAA TATCTATGGC AACGGCCCGC GGTTCGGCGA ACCGACGCTG CATCTGCACG CCAGCGAAAT CGTGATCCCA ATCTCGCGCA ACAAGCCGCC GATCGTGGTC ACAGCACCAG CGCCGGTGCA TCTGCATGCG CGGCTGCGCG GGTGTGGGTG GAACGGGGAG TAA
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Protein sequence | MSESHPEPTA MPELTAEEIL ARVLYRDGLM LVIDKPAGLP VHRGPKGGAN LESSFEFLRY GLPRPPVLAH RLDRDTSGCL VLGRHRKATA SLGLLFKHGR ISKTYWAVVE GGPIEDEGTI ELPIGRLNAE RGWWQKIDPE GQPATTKWRV LGRGDGLTWL ALQPVTGRTH QLRVHSAAMG WPIVGDNIYG NGPRFGEPTL HLHASEIVIP ISRNKPPIVV TAPAPVHLHA RLRGCGWNGE
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