Gene Sde_3964 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_3964 
Symbol 
ID3967268 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp4996300 
End bp4997523 
Gene Length1224 bp 
Protein Length407 aa 
Translation table11 
GC content43% 
IMG OID637923061 
Producttransporter, putative 
Protein accessionYP_529431 
Protein GI90023604 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0738] Fucose permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value5.23123e-10 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.125467 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGAATC AAATATTGAG CGAGAGGGAG AAAAAGTCTG TTAAGTGGCT GACTTTTATC 
ATGTTTTTAA TATTCGCTAT GACCACAGAT GCAGTAGGGG TAATTATCCC AGAGGTGATT
AAAACCTTTG GTCTAACCCT TACCCAAGCC GCAACTTTTC ACTATGCAAC GATGATAGCC
ATAGCAGTGT CTGGTATTTG TTTAGGCTAT TTAGGCGACA GGTTCGGCAG AAAGCTAACC
ATTGTAGGCG GCCTAGCCTT GTTCGCTTTG GCGAGTTTTC TTTTCGCAGT AGGTTCGAGT
TTCGGCTTCT TTTTATTACT TCTCGTAGCC ATTGGCACCG CCGTTGGCAT ATTTAAAACA
GCCGCACTCG CGCTTATAGG CGATATCTCT TCAACACCTG CTGAACATAC TAAAACAATG
AATCTGGTTG AGGGGTTTTT CGGTATTGGC GCCATAATTG GGCCAGCATT AGTCGTTTAT
CTGCTCGCGC AAGGTATTTC TTGGACATAC CTTTATGTTG TGGCTGGTGG GCTGGCCGTT
TTACTCATTG TTTTAGCTTC TGTTAGCCGC TACCCAGAAC AAGCTAAAGA AGTGGATTTA
TCGGTAAATT GGAAGGCAGC GTTTAGCTTA GCAAAAGATT GGTATGCGCT TTTCTTCTCT
AGCGGTATAG CTTTGTACGT AATTGTTGAG TGTGCGATTT ATGTATGGAT GCCAACTTGG
TTTTTAGAAT ACGACGGCAA CTACCCTCTA TTGGCTACTT ACGCCTTATC TGTGTTTTTT
ATATTGCGCG CAGCGGGGCG GTTTTTAGCC GTTTTAGTGC TTAATTTAAT GAGCTGGCAA
ATGGCAATGG TGGTTTGTAC TGGTGCTATT TTTGTTTGCT ACCTAGGAAG CATCGTTCTT
GGCGTAAACT ATGCTGTTTG GCTCTTACCT GCTTCAGGTT TATTTATGTC GCTAATTTAC
CCTACATTAA ACTCCAAGGG CATAAGCGGT TTCGAGCCCC ATAAACACAG CTCGGCTGCC
GGTTTAATAT TGTTTTTTAC TGCCGTAGCA GCCGCCGTTG GGCCGTTACT AATGGGAGTT
ATTGGTGACT TCTTTGGTCA TTTAATTTTT GGTTTTGTTT TCTGTGCCGC TTGTGCTGGT
GCACTGTTTT TAGGTTGCAT ATTCAACTTT ATAAAAGACC CATCCTCTCA AAGGCTTAGT
GCAATCTCTT TAAAACATAG TTGA
 
Protein sequence
MTNQILSERE KKSVKWLTFI MFLIFAMTTD AVGVIIPEVI KTFGLTLTQA ATFHYATMIA 
IAVSGICLGY LGDRFGRKLT IVGGLALFAL ASFLFAVGSS FGFFLLLLVA IGTAVGIFKT
AALALIGDIS STPAEHTKTM NLVEGFFGIG AIIGPALVVY LLAQGISWTY LYVVAGGLAV
LLIVLASVSR YPEQAKEVDL SVNWKAAFSL AKDWYALFFS SGIALYVIVE CAIYVWMPTW
FLEYDGNYPL LATYALSVFF ILRAAGRFLA VLVLNLMSWQ MAMVVCTGAI FVCYLGSIVL
GVNYAVWLLP ASGLFMSLIY PTLNSKGISG FEPHKHSSAA GLILFFTAVA AAVGPLLMGV
IGDFFGHLIF GFVFCAACAG ALFLGCIFNF IKDPSSQRLS AISLKHS