Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3963 |
Symbol | |
ID | 3967267 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 4993647 |
End bp | 4996085 |
Gene Length | 2439 bp |
Protein Length | 812 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637923060 |
Product | TonB-dependent receptor |
Protein accession | YP_529430 |
Protein GI | 90023603 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00000386767 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.0993256 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCACAC AAAACACTAA CCAAGTATTA GCTAAGAATG TCTTAAGTTT CATGGTTGCT TCGGCGATCG CGGGTTTTGC CCATGCAGAG TCGACGGGAC TCGCGCTGGA AGAAGTATTA GTGACGGGCT TACCTACCCA ACAAACAAAA ATGGATGCAA GTGTGTCCTC TACCACCTTG TCACCCGAGC GGGTAGAAAA CAGTGTGGCC CGCAGTACCA CAGAAATTTT CTTAGCCATT CCTGGTGTGC GCTCAGAAGC GTCAGCCGGT GAGAGTAATA CCAACCTTTC TATTCGCGGC ATACCCGTAG CATCCGGTGG TGGCAAGTTT ATGCAACTGC ATGAAGATGG TTTGCCTGTA ATGCAATACG GCGATGTAAT TGTAGGTAAC GCCGATAACT ATCTTAGTTA TGACTGGACA GTTAGCCAAA TTCAGGCCGT CAAAGGCGGT ACTTCAGCTA CATTGGCAAG TAACTCCCCT GCTGCTGTTA TTAACTTTGT AAGTAAAACA GGTGAGGAGG AAGGCGGTAG TGTTGGCTTT AGCACCGGCG TTGATTACGA CTCAAACCGC ATGGACTTTG AGTACGGCAG TCCATTTTCT GACGGTTGGA TGTTCCACGT TGGCGGCTAC TATCGCACCG GTGAAGGTGT GCGAGACACA GGGTTTAATG GTAACAAAGG TGGCCAATTA AAGCTGAGTA TTAAAAAAGA ATTTGATCGC GGCTATGTGC GTGTATACGG CAAAGTGCTA GATGACAAAA CCACCACCTA CTTGCCCATG CCTATGCGCG CGGGTGGCGA TAGCATTACT GGTTTCGATG CCCTCAAATC TTCTAATATT CCAAGTGAAC TGCTTGCAAT ACAAACCGGT GATGGCGGAA CAGGTGTACG CCATTCAAGT ATTGGTGATG GTAGCTCAGT AAAATCACAA GTGATCGGCG GTCAAATTCA GTTTGATATA ACTGACGACC TAATTCTTAG TGAAAAATTT CGAGTTGCCC AGAATTCAGG TAAATTTGTT GGTGCGTTCA GCGCAAATAT TGGCGCGGCG TCAGACCCTT CAGGTATTGC TTCTGGTTTA GGTAGCGCAA ACGGCTTGGC CTATGCTTCT GGTAAAAACG CGGGAGAACT ACTAAGTGCA AGCGACTTGG CAAACCTTAA TGGCAACGGC TTAATTCAAA ATATTCGTAC GTTTGATAAC GATATTAATA GTTTAAATAA TTTTAGTAAC GATATTAGCT TAACCAAACA ATTTGATAGC TGGGATATTA CCGCTGGCTA TTACACAGCA AGCCAAGCCA TAGATATAAA CTGGTATTGG CAAACCTATA TTGCAGATGT AGCGGATGAA ACGCGCCTAC TAAATGCTTA TGAAGACGAC GCCCAACTAA CAACAGGTGG CTTAGTTGCT TACGGCGCGC CTGACTGGGG TTACTGTTGT TATCGCGATA CCGCGCTAGA AACAAACTTA GACGCGGTCT ACATTGCTTT AAATGCAAAT ATTAATGACG ACTTAAGTGT AAGCGCTAGT GTTCGCAGCG ATAGCGGCGA TGCAATTGGT CATTACGCGT TTGGTGCGAA TAACAGTGTT GATTTTGATG GCAATGGAGA AATCTCTCTC GCAGAAAGCC AAGCTCAAAC TATCAGCCAG GCGTCAATTG CAGGCAGCCA ATATAAATAC GATTGGGCAT ATACCTCCTA TGCTTTGGGT GCAAACTATT TACTTAACGA TTACTCCGCT ATTTTTGCCA ACATCAGTGA TGGCGGCCGC GCGAACACAG ACCGCTTAGG TGACGGTGGC TTTATTGTAG ATGGTACCGT TGTGGATGGT GCGGTGGAAA ACCGAGTGCG CCAATACGAA TTTGGTTATA AGCGCGAAGG TGACTACGCC GGTATTTTTG CCACAGCATT TTATGTTCAA ACCGACGATG TAAACTCTGA AGGTACCAAT GGCAGCACAT TAACCGCGCG TGTTCGTGAA TATGAATCTA CTGGGCTAGA GCTAGAAACG TTTGCGAATC TTGGTGCAGT TACGCTACTT GCAAACGCGA CTTGGACTCA AGCAGAAATT GTGAGCAGTA ACGATGCATC GTTAATTGGT AATACTCCTC GCCGCCAAGC CGATTTAGTT TATTCAACAA CAGCATCCTA TGCTTGGAGT GATCACAGCG CTGGCTTGAC ACTCATAGGC ACCACCGATT CCTACGCGCA AGACGCCAAC GACTACACGC TTGATGGTTA CAACTATGTT AATGGTTACG TTAATTTTGG CCTTGCAGAC GGCTTTACGG TTTCGCTAGC GGTTAACAAT ATTTTTGATC AAATTGGCGT GACCGAAGCT GAAGAAAATA CTCCTATCTC TATTAGCGGT GCAGACTATG TACGCGCTAG ATCCATCGCC GGACGCTCTA CTAGCTTGTC AGTCAAGTAT CAGTTCTAG
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Protein sequence | MSTQNTNQVL AKNVLSFMVA SAIAGFAHAE STGLALEEVL VTGLPTQQTK MDASVSSTTL SPERVENSVA RSTTEIFLAI PGVRSEASAG ESNTNLSIRG IPVASGGGKF MQLHEDGLPV MQYGDVIVGN ADNYLSYDWT VSQIQAVKGG TSATLASNSP AAVINFVSKT GEEEGGSVGF STGVDYDSNR MDFEYGSPFS DGWMFHVGGY YRTGEGVRDT GFNGNKGGQL KLSIKKEFDR GYVRVYGKVL DDKTTTYLPM PMRAGGDSIT GFDALKSSNI PSELLAIQTG DGGTGVRHSS IGDGSSVKSQ VIGGQIQFDI TDDLILSEKF RVAQNSGKFV GAFSANIGAA SDPSGIASGL GSANGLAYAS GKNAGELLSA SDLANLNGNG LIQNIRTFDN DINSLNNFSN DISLTKQFDS WDITAGYYTA SQAIDINWYW QTYIADVADE TRLLNAYEDD AQLTTGGLVA YGAPDWGYCC YRDTALETNL DAVYIALNAN INDDLSVSAS VRSDSGDAIG HYAFGANNSV DFDGNGEISL AESQAQTISQ ASIAGSQYKY DWAYTSYALG ANYLLNDYSA IFANISDGGR ANTDRLGDGG FIVDGTVVDG AVENRVRQYE FGYKREGDYA GIFATAFYVQ TDDVNSEGTN GSTLTARVRE YESTGLELET FANLGAVTLL ANATWTQAEI VSSNDASLIG NTPRRQADLV YSTTASYAWS DHSAGLTLIG TTDSYAQDAN DYTLDGYNYV NGYVNFGLAD GFTVSLAVNN IFDQIGVTEA EENTPISISG ADYVRARSIA GRSTSLSVKY QF
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