Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3610 |
Symbol | |
ID | 3966567 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 4576100 |
End bp | 4576849 |
Gene Length | 750 bp |
Protein Length | 249 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637922707 |
Product | ABC transporter ATP-binding protein |
Protein accession | YP_529077 |
Protein GI | 90023250 |
COG category | [V] Defense mechanisms |
COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.000141343 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGACTATTT TACAAGCCGA ATCACTTAAT ATTATGCGTT CAGGAAAGCA GGTGCTTAAC GGCATTTCTT TTCAAGTTGC CGCCGGTGAG GTATATGCCT TACTCGGTGG CAATGGCGCC GGTAAATCCA CCACCTTACT CAGCTTTTTA GGGTTTTTAT CTCCTACGAG CGGCAGTGTT TCCGTTAATA ATCAAGATGT ATATAAAGAT GTAGCTAGCG CCCGAAAAGC GATGGCATAT CTGCCGGAGT CTGCGTCGTT ATACGAGCAC TTAAATGCCT ATGAAAATAT TGATTACTTT ATGCAGTTGG CTGGCGGGGC AGTTAATCGC GCAGATATAG AAACCGCGCT CGAGCGTGTA TCGCTAGCGC AAGGAGCACG GCAGAACAAA CTACGCGGTT ACTCGAAAGG CATGCGTCAA AAAGTCGCGA TTGCATTAGC AATATTGCGC GATAGCAGCA TATTGCTATT AGACGAGCCT ACTTCGGGTT TAGATCCTAG CGCCATTGAT GAATTCCATC AGCTGGTGCG GGATCTGGCG GACAGCGGTA AAGCCGTACT GATGGTAACC CATGATGTAT ACGGTGCCTG TCAGGTAGCG GATAAAATTG GCTTACTGCA CAGTGGCTTG TTAGTCGGGG AGTTTGTGGC CGAACATGCT CGGATTGATA CCGAGACGGT CCACAAAGCG TTTGCTTCCA CTGTTGATCA TGCATCATCT GTAAGGTCAG CAATGTTGGA GCAAGGCTAA
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Protein sequence | MTILQAESLN IMRSGKQVLN GISFQVAAGE VYALLGGNGA GKSTTLLSFL GFLSPTSGSV SVNNQDVYKD VASARKAMAY LPESASLYEH LNAYENIDYF MQLAGGAVNR ADIETALERV SLAQGARQNK LRGYSKGMRQ KVAIALAILR DSSILLLDEP TSGLDPSAID EFHQLVRDLA DSGKAVLMVT HDVYGACQVA DKIGLLHSGL LVGEFVAEHA RIDTETVHKA FASTVDHASS VRSAMLEQG
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