| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3510 |
|---|
| Symbol | |
|---|
| ID | 3966352 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 4464071 |
|---|
| End bp | 4465465 |
|---|
| Gene Length | 1395 bp |
|---|
| Protein Length | 464 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637922607 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_528977 |
|---|
| Protein GI | 90023150 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2995] Uncharacterized paraquat-inducible protein A |
|---|
| TIGRFAM ID | [TIGR00155] integral membrane protein, PqiA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.21998 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.777652 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCAAG AATTTCTTGA GCAGCAGCGG GATTGGTTAA TTTGCCACGA CTGTGGCGAA
ATACAGAAAG TAGTGGCCAT TTCTCCCGAG CACGAAATGT TGTGCTTTAA CTGCGGCGCT
AGCTTGCACT CTGGCAAGGG GCGCTGGCTA GCGGCGGCGA CTGCGCTTTC CCTCGCCGCG
CTGGTGCTGT TTATAGCTTG TAACTTTTTG CCCTTTTTAA CATTAGAAAT TGGTATGCAA
AGCCACACCA CTACCATTAT GGATGGTGTG GGTGCGCTAA TGGCTCGCAA TCAATGGTTG
CTTGCAGGGC TTGTGGTTAC CACCACATTT TTATTCCCCT TGTTTGAAAT TTGCGCGTAT
ATGTACGTGC TACTGCCCTA TCAATTCAAT CGGCGCATGC CTGGGCACAC ACCGGTGTTG
CGCTGGCTTA TTCAGGCACA AAGCTGGAGC ATGCTCGAAG TGTTTATGCT TAGCGTGGTG
ATAACCACGG TAAAGCTCAC CGATATGGCA GTGCTAAAAC TCGGCCCAGG TGCCTACCTG
TTTTTTATGT TAGTGGCCAT TTTGCAGTTA ATCTTTTTAA AAATAGACCG GCGTAAACTG
TGGCAATGGA TAAATACTAA CAACTATTTT AGCCGCGAAG AAAACGAATA CGCTTACGAC
TGTCGCATCT GTCAGGCGTT GGTGGGGGAA TCAATCGTAG TGGATGAAGG CGCTTGCCCG
CGCTGTGATT CAGCCATTCA CAAACGAATA CCGGCAAGTT TACAAAAAAC CACGGCGCTT
GTGGTTGCCG CCACTCTGCT CTATATACCG GCTAATGTGC TGCCTATTAT GGAGTACACC
TCGCTGGGGA TTACCGAAAA AGATACTATC TTTTCTGGCG TTATCGAGCT GTTAAAAGAA
GGGTTATGGG GTATAGCAAC CATTGTGTTT GTGGCCAGTA TTTTAGTGCC CATTGCTAAA
CTTGTTATTC TTTACTACTT AATTTGGGCT GTTAAAGCTA AGGTTAAAGT AGGGGTTAAG
CACCGAACGG TATTGTACAG GCTTATAGAA GTGGTTGGCC GCTGGTCCAT GGTGGATGTG
TATGTGGTTA CAATACTGGT GGCACTTGTA CAATTTGGGT TTATTTACAC CGTAGAGCCA
GAAGGTGCCA TTATTGCCTT TGGTGCGGTG GTGGTGCTCA CCATGCTGGC CGCCGAAAGT
TTTGACCCAC GCCTACTGTG GGATGCATCC TGCGATGAGG ATGATGAACG TGTTAAGCAC
TGCGATGAGC ACACCAAACC AATATTAGCT TGGGGGGCGT ATTGTGAAAT TGATCAAAAG
CCCAATGCCG AGCAAGATGA TGTAGCGTCA AACACTGGCG TATCAACAAG CCAAGAATCA
AAAACGGAAC CCTAG
|
|---|
| Protein sequence | MTQEFLEQQR DWLICHDCGE IQKVVAISPE HEMLCFNCGA SLHSGKGRWL AAATALSLAA
LVLFIACNFL PFLTLEIGMQ SHTTTIMDGV GALMARNQWL LAGLVVTTTF LFPLFEICAY
MYVLLPYQFN RRMPGHTPVL RWLIQAQSWS MLEVFMLSVV ITTVKLTDMA VLKLGPGAYL
FFMLVAILQL IFLKIDRRKL WQWINTNNYF SREENEYAYD CRICQALVGE SIVVDEGACP
RCDSAIHKRI PASLQKTTAL VVAATLLYIP ANVLPIMEYT SLGITEKDTI FSGVIELLKE
GLWGIATIVF VASILVPIAK LVILYYLIWA VKAKVKVGVK HRTVLYRLIE VVGRWSMVDV
YVVTILVALV QFGFIYTVEP EGAIIAFGAV VVLTMLAAES FDPRLLWDAS CDEDDERVKH
CDEHTKPILA WGAYCEIDQK PNAEQDDVAS NTGVSTSQES KTEP
|
|---|
| |