Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3301 |
Symbol | |
ID | 3965812 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 4211930 |
End bp | 4213024 |
Gene Length | 1095 bp |
Protein Length | 364 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 637922398 |
Product | lipoate synthase |
Protein accession | YP_528768 |
Protein GI | 90022941 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG1702] Phosphate starvation-inducible protein PhoH, predicted ATPase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 45 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.0967934 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGGACAATC ATTTTCATAC TGAAGAGCTC ACCTTCGAGC CCAGTGACGC ACACCGTCTC GCTGCCCTCT GCGGCCAATT TAATGGTCAC ATCAAACAAA TAGAACAGCG CCTACAACTC GATATTCGCA TTAGAGAAAA CACCGCCCGC CTTACCGGCC CGCAGCAGAG TGTTGCCCTT GCTCGCGATA TATTGCGCCA ACTATACAAA GACACCGAGA CTCAACCCGA CCTTTCCCCC GATCACGTTC ACCTCGCCAT ACAGGAATCG TTAATGGACA CAGCTATCGA AGAAGTGACC CTCGACGACG CAGCGCCTAA CGCCGATATA GAACAGGCCT ACGCCAGTGT CAGTATGATC AAAACCAAAA AGTGTACGGT AAAACCGCGG GGAGGCAATC AGTCTAACTA CGTTATGGCT GTGCGCGCGA ACGATATAAA TTTTGGTATT GGCCCTGCTG GTACAGGTAA AACATACTTG GCCGTAGCCT GCGCCGTGGA AGCGCTGCTT AAAGACGAAA TTGAGCGCAT ATTACTTGTG CGCCCAGCGG TTGAAGCCGG CGAAAAGCTG GGCTTTTTAC CCGGCGACCT AAGCCAAAAA GTGGACCCAT ACCTGCGCCC ACTCTACGAC GCACTGTACG AAATGCTGGG CTTTGAAATT GTAGAAAAAC TTATAGAGCG CAGCGTGATA GAAGTGGCCC CGCTGGCGTA TATGCGCGGC CGCACACTGA ACAATGCCTT TGTTATTTTA GATGAGAGCC AAAACACCAC CCGCGAGCAG ATGAAAATGT TCTTAACGCG TATTGGCTTT GGCTCCACCG CGGTTATTAC CGGTGACCCG TCACAGGTAG ACTTGCCACG CGGTGCCGCC TCTGGCTTGC GCCACGCCAT CGAAATTTTA GAAGGCGTAG AGGGCATTAG CTTCACCTAT TTCACCTCTC GCGATGTTGT GCGCCACCCC ATAGTGCAAC GCATTGTGGA CGCCTACGAA AAAGCGGAAG CCAAGGCAGA AAAAATTGCC AAGGAAGAAG CCGAAGAGCG GGCGAGATTA CGCGCCGAAT TCAAAGCTGA GCAAGCTCAA CGCAACGGCG AATAG
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Protein sequence | MDNHFHTEEL TFEPSDAHRL AALCGQFNGH IKQIEQRLQL DIRIRENTAR LTGPQQSVAL ARDILRQLYK DTETQPDLSP DHVHLAIQES LMDTAIEEVT LDDAAPNADI EQAYASVSMI KTKKCTVKPR GGNQSNYVMA VRANDINFGI GPAGTGKTYL AVACAVEALL KDEIERILLV RPAVEAGEKL GFLPGDLSQK VDPYLRPLYD ALYEMLGFEI VEKLIERSVI EVAPLAYMRG RTLNNAFVIL DESQNTTREQ MKMFLTRIGF GSTAVITGDP SQVDLPRGAA SGLRHAIEIL EGVEGISFTY FTSRDVVRHP IVQRIVDAYE KAEAKAEKIA KEEAEERARL RAEFKAEQAQ RNGE
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