Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_2240 |
Symbol | |
ID | 3964844 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 2845997 |
End bp | 2848825 |
Gene Length | 2829 bp |
Protein Length | 942 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 637921331 |
Product | sensor/response regulator hybrid |
Protein accession | YP_527712 |
Protein GI | 90021885 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.00499034 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAATCTC AATCAGTTCA AACGGAATTG TTTCGTCTCA TTACAGTACC TGTGTTTGCG GCCTGCTTTA TTTTGGCGTC CACTTTTTTC TATCTACAAA AAAGTCACAT AGAAGACCAA TTTAGCAACA ACAAACACCT AGCTACCGAG CTACTAAACA GCGTTGTATT CTCCAATAAA GCGAGCACAA ACCCCTTCGC CGAAGCGGCC AATGCTTTGC TCGCCACAGG CGATTATCGT TCGATTGTTG TAAGCAGTGC TACAGGGCAA CAAATCGCAA GCTACGGCCT GCCTTTACGT ACACACAGCT ATCAAACCCA ACTAGGCGTA GAATCGCAGT GGACTCACGA AGATTCTCTT ATCTATTCAT TTCCACTCAA AAAATCTAAC TTACAAAGTA GCACCCCACT CTGGGTGATA ATTGCTATAG ATAAACGCAG CTGGGCTATT AGCGAGTATC AAGGCACTAT TACAATATTA CTTGCTGGCT CACTGTGTTT GTTTCTAACA TTCTACTTTG CGCGACGCTT CCGCGATGCC CTTGCCACAC CCTTGCAAAA AATTGAAACT GGCTTAAGAG ATTTTCTTAA GGGTAATTTC GAAAAAAGCA TTACTATCGA GCCCTCCTCA GTATTTAAAG ACCTAGCCTC TAATATTAAC CGTCTTGGCG CACTGCAAAA ATCCGCCAAT GACGAACTTC AACTTAATAT AGATCAATCC ACACATGAAC TGCGTGAAAC ACTAGAAACG GTAGAAATAC AAAATATAGA ATTGGATATA GCGCGCAAAT CTGCCCTGCA AGCCAGCCGA GTTAAAAGTG AGTTTTTGGC AAACACCAGC CACGAAATAC GCACCCCCCT AAACGGGATA TTGGGCTTTT CCGAACTTCT TCGTAAAACT GAGCTGAATA ACCAGCAAGT AGACTACCTC ACCACTATAG AAGAGTCTGC TAAAGGCTTG CTCACCATTA TCAACGATAT TCTAGACTTT TCACGCTTAG AAATAGGTAC GCTTACTCTG GAATATAAGC CAGTTAAAAT ACGCCAATTA ATTGAAGACA CCCTTAAATT ACAAACCCCC GCTGCGAATG AAAAAAATAT TCGCATGCTC ACCATTATTG ACCACGATGT ACCCGAAAAC CTGCTTGGCG ACCCGCTTCG CTTGAAGCAG GTGCTAAGCA ATCTGGTTTC CAACGCCATA AAATTTACAG ATGTTGGCTA TATTTTACTG GGCGTTAGCA AAGACCAAAG CTCTGAGAAT CAATTCACTT TAAAGTTTAG AGTTACCGAT AGCGGTATAG GCTTATCTCA AGATCAACAG GAGCGACTAT TCGACCCGTT TACCCAGTTG GATTCGAGTG AAAGCCGGCT ACACGGCGGT ACCGGCCTAG GTTTGGCCAT CGCAAAAGGC CTTGTGGACC GAATGAATGG CACTATAGGT GTAGAAAGCA CCCTAGGAAA AGGGGCCACA TTTTGGTTTA CAAGCACCCT AGGTAGAAGC CCGAGCGCGA GTGCAAAACA AACCTATTTA GCGGGCACTT TGCGCGGCGT GCACGCGCTA GTATTCGATC ACAGTAATAT GGGGCGAATG GAAATTACCC ACTACCTAAC CGGTTGGGGG GCAAAAGTTT GCGAGACTGG CGAGATGGAG GACATTGAAC CTCAAATAAG CTTCTTTAGT AATAGCGAGC CAGTAGATAT AGCAATTATC GATAGCATGA TTGATATCAA AACATTCGAT CGTCTGCGTA TTTGCGAACA CGTGACTCAG CTAAACCATC GTTTCAATAT TCCTGTAATT ATTTTGGCTC CAAGCAGTAT TCAACGCATA CTAGAGCCAC ACCTAGCCGG CACCAATAGC CTATTTATTA ATAGACCACT TTTTTGTAAC AAGCTGCATC AAACCATTTG CGAACAATTA GAAATTGTAG CTACTGAGAA TATTGAAAGT AGAACCTATC TTCACCAGCA CGAACCGCTT GAACAGCAAC AGGTGAATAT ACTTGCGGTA GATGACAACC CCGCTAACTT AAAACTTGTA ACAGAGCTGC TTAAAGGGTT AAACATTAAT GTGACGCCTG TGGAAAGTGG CGAACAAGCA ATTGCCCAAA TAAAAGATTC CCATTTTGAT TTGATTCTAA TGGATATTCA AATGCCCTCT ATGGATGGTA TTGAAACTAC CGGCCATATT CGTGAACTTG AAACAAGCGG CCCACGAACA CCCATAATTG CACTTACCGC CCATGCAGTC AGCGAGCAAA AATCCAGATT ATTACTCGCA GGCATGGATG ATTGTTTAAG CAAGCCCGTG AGCGAAAGCG AATTGCGCCA TGTTATTGAA CGCTGGACCA ATGTAACTAT TGCCACCAAG ATTGCGCCCA CCAACCCGGC ACCTGTTGCA AGCGCATTAA TTGAGCACTC ACCTAACGCC GATAAAACCG GTGAGAATCA ACCCGCAACA GATAGTCAAG CTGCCGCCAT TGTAGATCGT GCGCTAGGCC TAAGCCTTAC CAACCAAAAC CCTAGCCTGG CCGGCGATAT GCTTTCAATG CTTATAGAAA CACTACCCGA TGTGCTTCAC AAAAGCCGTA CACAGTACGA AAACAAGCAA TTTGATGAAC TGCAAGAAAC AGTACATAAA CTGCATGGAG GCTGCTGTTA TTGTGGTGTG CCACGACTAA AAGCCATAAG CGAACAGATT GATAAAAACC TGCAAAAAAA CAAGTACAAC AATTTAGCGA ATGAAATACA ACTATTAGAA GCGGAGATAA AAAACTTACT GCAATGGGCG GAAGAACACG ATATAGACGT GCTTTTTAGT GACGATTAA
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Protein sequence | MKSQSVQTEL FRLITVPVFA ACFILASTFF YLQKSHIEDQ FSNNKHLATE LLNSVVFSNK ASTNPFAEAA NALLATGDYR SIVVSSATGQ QIASYGLPLR THSYQTQLGV ESQWTHEDSL IYSFPLKKSN LQSSTPLWVI IAIDKRSWAI SEYQGTITIL LAGSLCLFLT FYFARRFRDA LATPLQKIET GLRDFLKGNF EKSITIEPSS VFKDLASNIN RLGALQKSAN DELQLNIDQS THELRETLET VEIQNIELDI ARKSALQASR VKSEFLANTS HEIRTPLNGI LGFSELLRKT ELNNQQVDYL TTIEESAKGL LTIINDILDF SRLEIGTLTL EYKPVKIRQL IEDTLKLQTP AANEKNIRML TIIDHDVPEN LLGDPLRLKQ VLSNLVSNAI KFTDVGYILL GVSKDQSSEN QFTLKFRVTD SGIGLSQDQQ ERLFDPFTQL DSSESRLHGG TGLGLAIAKG LVDRMNGTIG VESTLGKGAT FWFTSTLGRS PSASAKQTYL AGTLRGVHAL VFDHSNMGRM EITHYLTGWG AKVCETGEME DIEPQISFFS NSEPVDIAII DSMIDIKTFD RLRICEHVTQ LNHRFNIPVI ILAPSSIQRI LEPHLAGTNS LFINRPLFCN KLHQTICEQL EIVATENIES RTYLHQHEPL EQQQVNILAV DDNPANLKLV TELLKGLNIN VTPVESGEQA IAQIKDSHFD LILMDIQMPS MDGIETTGHI RELETSGPRT PIIALTAHAV SEQKSRLLLA GMDDCLSKPV SESELRHVIE RWTNVTIATK IAPTNPAPVA SALIEHSPNA DKTGENQPAT DSQAAAIVDR ALGLSLTNQN PSLAGDMLSM LIETLPDVLH KSRTQYENKQ FDELQETVHK LHGGCCYCGV PRLKAISEQI DKNLQKNKYN NLANEIQLLE AEIKNLLQWA EEHDIDVLFS DD
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