Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1507 |
Symbol | |
ID | 3965035 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 1941337 |
End bp | 1943958 |
Gene Length | 2622 bp |
Protein Length | 873 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637920585 |
Product | hypothetical protein |
Protein accession | YP_526981 |
Protein GI | 90021154 |
COG category | [R] General function prediction only |
COG ID | [COG3291] FOG: PKD repeat |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.48117 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.0000051412 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGAAACA AGAAAATACC CAGGTTACCC AGTGTATTTA TGGCTGTTTT TACGCTGTTT TTTGCGTTTT CAGCTTATGC AATAGAACCG ATTGCACTTA GTGCGAGCGG TGATGATGGC AACGGCCCAA ATAATACGTT AGATAATAAT TTAGGCACGC GTTGGTCGGC GAACGGCAAT GGCGTATGGA TTGAATATGA CTTCGGAGCA GAAGTTACAA TGGGAGCGGT TGAGATAGCC TTCTATAAGG GCGATCAACG CAGTGCCACA TTTGAAGTGC AAAGCTCGCT AGATGGAGCA AGTTGGGATG TTAATTTAAA CACATTCTCA AGCGGTTCAA CTTTGGCTAT GGAACCCTAT ACGCTAAATG TTCAGGCGAG ATACTTCCGA ATAGTTGGTT ATGGAAATAC AAGTAATACT TGGACGAGCA TTACTGAAGT GAACTTCGTG GAAGGGGATG GCCCAATTCC ACCCGAGCCC CCTGTAGAAG GGCAGCTAGA TGTACATTCT GTGGTTGCAA GTAGTGATGA CGGGAATGTA GCGAGTAACA CTCTAGATGG CTCGCTAAGT ACGCGCTGGT CGGCGAATGG GAATGGTCAA ACCATTACTT ACAATTTGGG CAGTATGCAA TTGGTAAAAA GTGTGAGCAT GGCTTTTTAT AAAGGCGATC AGCGAAGCGC TACTTTCGAT ATTCAAGTAA GCCCAGATGG ATCTAATTTT TCCACTGTGT TTAGCGGGGA AAGCTCGGGT AACACGCTTG CGTTGGAAGA GTTTGATATA CCCAATATGC CTGCACAATT TGTACGTATT GTAGGGTACG GTAACAGCGC TAACTCTTGG AACAGCATTA CAGAAGTAGA AATATATGGC GGTGGTGATA TTAGCAATGT GCCTCCTGTT GCCAGCTTTG ATATTGATGA CGAAGTTTCG ATTGATGTGG CGTTAGTTTT CGACGGTTCG AATTCCTTTG ACCCCGATGG CGGCAGCTTA GCTTCATACA GTTGGGATTT TGGCGATGGC AGCGATGCAA CCGGGGCAGT GGTTAACCAC ACATACAGCG CTGGCGGTAG CTATATTGTT AGCTTAACTG TAACTGACGA TGAAGGGGAT AGCGCAACGG CTACCCATGC CATTACTGTT GACGACAATA AAGAACCGCC TGTTGTGGTG ATTGGCGCAC CCGCAAGTAC CGCGCCGAAT GTTGTGCTAA ATATTGATGG TAGTGCTTCG TTTGACCCTG ATGGCGGTAA CCTTGCAAGC TACTTATGGG ATTTTGGCGA TGGCACGTCC AGCTCGGACG TAGCGCCGCA AAAATCGTAT AGCTCAGATG GTGTGTTTGA ATTGTCTTTA ACTGTAGTCG ATGATGAAGG TGAATCTACA ACGGCAACTC AAACTATTCG AGTGAGTTCG GTTAACCCAG ACTTTGAATT GTGGCCACTA GTGAATGCGA GCTTTGAGCT TAGCACTTCA GAAGGTGGTT GGTTAGAGGT CGACCCTGCA AACGTTGTAT CCATGAATGG TACTTCTAAT CCACAGCCAC CTGAAGGCGG TAGGTTATTA GTTATCGACG GCGATGGCGG TATTATCAAG CAGGCGATTT ATAAGCCTAT TGCCGGCCAC GTATACGAAA TTACAGCTTA TGTGTATGGC CACGGTACCA TCGGCATACA AGATTTAGGC TCCGATAACG TATACGAAAC CAGTACGGCG CACGGCAACA GCTGGCAACA AATTTCTGTA ACCTATGTGT CTACGGGGTC ACCGGCAATG CTTTACGCCA AGTATGGCCC AGGCTCTGGC GATTCTTATT TTGATGTTTT CGACGCGAAA GATATTTCAA CCGCCGAAGA TTTGAGTAAG CAACCTCCTG CACCAATAAT GCGTTATGCC TCACAAGTTA TCGATCTTTC TTGGTGGAAA ATTACATTGC CAATTAACAA TGCAATGGAA ATTTACACCC CAGAACTTTT AACTTACGAA ATAGACCCTT GGTTTAAATT AGTTGAGGAT GAGGACGGGT ATGCAGTGCA ATTCCGTGCG AATCATGGTG GCTCTACAAC AGGTGGTTCA TCCAACCCGC GCAGTGAATT GCGTGAATTA ACCCAAAATT ATCATTACCG TAATTCAAAA AGTGCAGCAG CTTGGAGTAA TACAAGCGGT ACGCATGAGA TGTGGATTAA GCAAAAAGTT ACCCACTTAA CTTACGTAAA ACCACATGTA GTTGTTGGGC AAATTCACGA TAGTGGCGAC GATGTTACCG TGTTCCGAGT AGAAGGGCAC CTAGGGCAAG GCGGTGACTG GGATAACAAT GGCACTGTTG GGGTAATGGA TACCCACGCA AACATATGGA TTACAAACGG CAACGATCGC CATGGTTACC TTGTGGATGA TAATTACGAG CTAGGTACAG TGTTTACCGT TAAGTTTATA GCGCGAGATG GCAAGGTGGA ATATGAGTAC AACGGCCGTA AACTCGATTA TGTGCACGAG GAAAGCTTCT CTGGCGCATA CTTCAAGCTA GGCAACTACA CGCAATCTCA TAACGGTACA GCACCCGGCG AAACGGATGA CGCCTATGCA GAAACCTATG TTTACGACTA TTACATAAAG CACACCGAGT AA
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Protein sequence | MRNKKIPRLP SVFMAVFTLF FAFSAYAIEP IALSASGDDG NGPNNTLDNN LGTRWSANGN GVWIEYDFGA EVTMGAVEIA FYKGDQRSAT FEVQSSLDGA SWDVNLNTFS SGSTLAMEPY TLNVQARYFR IVGYGNTSNT WTSITEVNFV EGDGPIPPEP PVEGQLDVHS VVASSDDGNV ASNTLDGSLS TRWSANGNGQ TITYNLGSMQ LVKSVSMAFY KGDQRSATFD IQVSPDGSNF STVFSGESSG NTLALEEFDI PNMPAQFVRI VGYGNSANSW NSITEVEIYG GGDISNVPPV ASFDIDDEVS IDVALVFDGS NSFDPDGGSL ASYSWDFGDG SDATGAVVNH TYSAGGSYIV SLTVTDDEGD SATATHAITV DDNKEPPVVV IGAPASTAPN VVLNIDGSAS FDPDGGNLAS YLWDFGDGTS SSDVAPQKSY SSDGVFELSL TVVDDEGEST TATQTIRVSS VNPDFELWPL VNASFELSTS EGGWLEVDPA NVVSMNGTSN PQPPEGGRLL VIDGDGGIIK QAIYKPIAGH VYEITAYVYG HGTIGIQDLG SDNVYETSTA HGNSWQQISV TYVSTGSPAM LYAKYGPGSG DSYFDVFDAK DISTAEDLSK QPPAPIMRYA SQVIDLSWWK ITLPINNAME IYTPELLTYE IDPWFKLVED EDGYAVQFRA NHGGSTTGGS SNPRSELREL TQNYHYRNSK SAAAWSNTSG THEMWIKQKV THLTYVKPHV VVGQIHDSGD DVTVFRVEGH LGQGGDWDNN GTVGVMDTHA NIWITNGNDR HGYLVDDNYE LGTVFTVKFI ARDGKVEYEY NGRKLDYVHE ESFSGAYFKL GNYTQSHNGT APGETDDAYA ETYVYDYYIK HTE
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