Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1345 |
Symbol | |
ID | 3965294 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 1740751 |
End bp | 1742442 |
Gene Length | 1692 bp |
Protein Length | 563 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 637920421 |
Product | ATPases involved in pili biogenesis, PilB-like |
Protein accession | YP_526819 |
Protein GI | 90020992 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.931675 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGCTAAAG AAAAAAAGCG TTTGGGTGAT ATGTTGGTTG ATCAGGGAGT TGTTAGCCCA GATCAAGTCG TTATCGCAAT TACAGAACAG AGAAAAACTA AAAAGCCATT GGGTCAAGTG TTTATCGATC TCGGTTTTGT AACCGAACAC GTTATTCGCG ACACCTTAGC TGAAACGTTT GGTCAGGAAA GTATAGACCT TTCTTCGGCT GTGCCAGATT CTGAAGCGCT TGCGATGGTG CCTAAAAATG TGGCTACACG AAATAATGTA GTACCTATAA GCTTTAACCA GCGTTCATCC GAATTGCGAT TAGCGATGGC TGATGTTTAC GATGTAATGG TGTTAGACCG TATTCGTTCT ATATTGCCGT TAGATGTAGA CATTGTTCCG TTACTTGCCA CCGAAACCGA AATACGCTCA GCGCTTGATT TATTTTACGG CTATGAATTA TCAGTTGATG GTATTTTAAA AGAAATAGAA ACCGGTGAGG TGGATTGGCA TAGCTTGGAA GCTGTTGGCC AAGAGTATAG TCAGCCGTTA GTGCGCTTAG TAGATGCCGT ACTTTCTGAC GCGGTAAAGC GCGATGTGTC GGATATTCAC TTCGAACCAG AAAGAGGTTT TTTGAGGTTA CGCTATCGCA TTGACGGTGT GTTAAGGCAG GTTCGTAGCC TGCATAAAGA TTATTGGTCT GCTATTGCTG TGCGCTTAAA GGTAATGGCA AATTTGAATA TAGCAGAAAC GCGCACTCCG CAAGATGGAC GTATAAGTTT AAATGTGGGC GGAAAAGACG TGGATTTTCG CGTGTCAGTA CAACCGGTAA CACACGGTGA AAATATCGTG TTACGTGTGT TGGACCGAAC TAAAGGTATT GTTCCTCTAG AAAAACTCGA TCTTAACCCA GAAAATTTTG ATCTTATAAA ATTAATGATG AGTAGGCCCG AGGGAATTAT TTTGGTAACT GGGCCAACAG GTAGTGGTAA AACCACTACG CTCTATTCAA TGCTTAACCA TCGAAATTCG GTGGAAGTAA ACATTATGAC GTTGGAAGAC CCGGTGGAAT ACCCCATGGA TATGATTCGC CAAACGTCAA TAAGCGATGC AGCCAAAATG GATTTTGCAA GCGGTATACG TTCTTTAATG CGGCAAGACC CTGATATTAT TTTAGTTGGC GAAGTACGTG ATGAAGCTAC CGCAGAAATG GCATTTCGCG CTGCGATGAC AGGCCATCAA GTGTATACCA CTTTGCACAC AAATTCTGCG CTGGGTTCTA TTCCACGGTT AATGGATATA GGCGTAAAAA CAGATTTATT GGCCGGCAAT ATAATTGGCA TTATTGGCCA GCGATTAATT CGAAGGCTTT GCGTCAATTG CAAAAAGCCT CGCCCAGCAG AGGAGTTTGA AAGAATTATT ATAGGTGTTG ACGAGCCCAT TATTTTACAA GATGCAGTAG GGTGTGAAGC TTGTAATAAC ACCGGCTATA AAGGGCGAAT ATCTGTAATG GAAGTATTAA AAATAGATAA AGTGTTAGAT GAAATGATCG CCAAACATCT TCCCTTAAGC GAAATAGAAA ACGCCGCGTT AGAACTCGGC TTTAAAACTA TGGCGGATGA CGGTTTACGC AGAGTAGTGC TTGGGGAAAC CACTATCGAG GCACTCAGTC GTTCTGTTGA TTTAACAGAA CGGCTAAGAT AG
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Protein sequence | MAKEKKRLGD MLVDQGVVSP DQVVIAITEQ RKTKKPLGQV FIDLGFVTEH VIRDTLAETF GQESIDLSSA VPDSEALAMV PKNVATRNNV VPISFNQRSS ELRLAMADVY DVMVLDRIRS ILPLDVDIVP LLATETEIRS ALDLFYGYEL SVDGILKEIE TGEVDWHSLE AVGQEYSQPL VRLVDAVLSD AVKRDVSDIH FEPERGFLRL RYRIDGVLRQ VRSLHKDYWS AIAVRLKVMA NLNIAETRTP QDGRISLNVG GKDVDFRVSV QPVTHGENIV LRVLDRTKGI VPLEKLDLNP ENFDLIKLMM SRPEGIILVT GPTGSGKTTT LYSMLNHRNS VEVNIMTLED PVEYPMDMIR QTSISDAAKM DFASGIRSLM RQDPDIILVG EVRDEATAEM AFRAAMTGHQ VYTTLHTNSA LGSIPRLMDI GVKTDLLAGN IIGIIGQRLI RRLCVNCKKP RPAEEFERII IGVDEPIILQ DAVGCEACNN TGYKGRISVM EVLKIDKVLD EMIAKHLPLS EIENAALELG FKTMADDGLR RVVLGETTIE ALSRSVDLTE RLR
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