Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1296 |
Symbol | |
ID | 3965317 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 1685641 |
End bp | 1686471 |
Gene Length | 831 bp |
Protein Length | 276 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 637920370 |
Product | M24/M37 family peptidase |
Protein accession | YP_526770 |
Protein GI | 90020943 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0739] Membrane proteins related to metalloendopeptidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 0.492814 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0068339 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAGATTAT TAATTGTTCT ATTGTTATTA CCGTGTTTGG CGGTTGTTGC TGCGGAGCAG TCTTCGCAGA AAGTTGAATC TATAACGTTG CTAGATACGC TTACCCAGGG GGCTATGGTT CGAGGGCAGG TGAACGTTAA AGCTGGGGTC GAAGTATTAG GGCGCAGCCT TCGAATAGAT GATGAGGGTT ATTTTGTGTT TGGCCTAGGG CGAGATGCCG AGCCAGAGCT AACAATCCTT ATTCATCATA CCAACGGTAA CACCGAGAAA AAGACCTATT CCGTGCTGCA GCGCGAATAC GACATTCAAT ATGTTGAAGG GGTTGCGAGC AAATATGTCT CGCCGCCGCC TGAGGTAAGT CAGCGCATTG CAAATGATGC GGCCATGGTT AAGGCTGCGA GAGCAGAATC TAGGCCTGTA AGTGACTACC GCAAAGGCTT TGACTGGCCC GTAACAGGGC GAATTTCCGG AGTGTATGGT AGTCAGCGAG TTTTCAATGG TGTGCCTAAG CGGCCGCATT ATGGGTTAGA CATAGCCCGT CCTGTGGGCA CGCCCGTGGT GGCTCCCGTA GAAGGGCTCG TTACGCTTGC TGAGCCAGAT CTCTACTATT CAGGTGGCAC AATTATTATC GACCATGGTG ACGGAATTTC CTCTACCTTT ATACACCTAA GCAAAATAGA TGTAGCTAAA GGACAGGTGG TAGCAAAAGG AGACAAAATA GGGGAGGTGG GTGCGACTGG TCGAGTTACA GGCCCGCATT TGGATTGGCG TATTAACTGG TTTGAGCACC GCTTAGATCC CGCGCTAGTA TTGCCCCCTC AACCGGAGTA A
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Protein sequence | MRLLIVLLLL PCLAVVAAEQ SSQKVESITL LDTLTQGAMV RGQVNVKAGV EVLGRSLRID DEGYFVFGLG RDAEPELTIL IHHTNGNTEK KTYSVLQREY DIQYVEGVAS KYVSPPPEVS QRIANDAAMV KAARAESRPV SDYRKGFDWP VTGRISGVYG SQRVFNGVPK RPHYGLDIAR PVGTPVVAPV EGLVTLAEPD LYYSGGTIII DHGDGISSTF IHLSKIDVAK GQVVAKGDKI GEVGATGRVT GPHLDWRINW FEHRLDPALV LPPQPE
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