| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0909 |
|---|
| Symbol | |
|---|
| ID | 3965545 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 1173752 |
|---|
| End bp | 1175479 |
|---|
| Gene Length | 1728 bp |
|---|
| Protein Length | 575 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 637919971 |
|---|
| Product | Pectate lyase/Amb allergen |
|---|
| Protein accession | YP_526383 |
|---|
| Protein GI | 90020556 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0442] Prolyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00409] prolyl-tRNA synthetase, family II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.000725309 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.000000181101 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAGAGCCA GTAAGTACCT AATTGCCACC TACAAAGAAA CCCCAGCAGA CGCAGAAGTA
ATAAGCCACC AGCTAATGCT TCGCGCAGGC CTAATTCGCA AACTCGCATC GGGCCTATAT
AACTGGCTGC CCGCAGGCTT ACGCGTGTTG CGCAAAGTAG AAACCATCGT GCGCGAAGAA
ATGGACCGCG CCGGCGCCCA AGAGGTATTA ATGCCTGTAG TGCAACCTGC AGAGCTGTGG
GAAGAGTCTG GTCGCTGGCA ACAATACGGG CCAGAGCTAC TGCGCATTAA CGACCGCCAC
GACCGCGCGT TTTGCCTTGG CCCAACCCAC GAAGAAGTCA TCACCGACTT AATTCGCAAC
GAATTAAAGA GCTACAAACA GCTGCCCGCC AACTTTTACC AAATTCAAAC CAAGTTTCGC
GATGAAGTTC GCCCACGCTT TGGGGTAATG CGCGCACGTG AATTTCTAAT GAAAGATGCA
TACTCGTTCC ACGCATCGCA AGAGTGCCTG CAAGAAACCT ACGACATTAT GCACGCAGCC
TACTGCAAAA TATTCGATCG CATTGGCTTA GATTACCGCC CCGTGCTTGC AGATACAGGC
TCTATTGGCG GTACTGGCTC ACACGAATTT CACGTATTGG CAGACAGCGG CGAAGACGAT
ATCGCCTTCA GCACCGAAAG TAACTTTGCA GCCAACGTAG AGCTTGCCGA AGCCCTAGCA
CCGGCCAAGC AAACTGCAGA GCCTTTACCG CGCGAAGAAG TTGCAACACC CAACGTAAAA
ACGATTGAAG ATGTTGCCAA ACTATTAGAT GTACCCACTA CCCAAACCGT TAAAACACTA
ATCGTAAAAG GGGTAGAAAA CGAAGACGGC AAACACACTC TGGTTGCCTT GGTATTGCGC
GGCGACCACG CACTTAATGA CATTAAAGCA ATTAAGTTAG CGCACGTTGC CAACCCACTA
GAATTTGCAG ACGAAAGCGG CATTAAAGCC GCCGTTGGCG CAGAAGTAGG TTCGCTAGGC
CCCATTGGCC TATCCATGCC AGTATATGTA GACCGAGCCG CAGCAGCATT GGTTAACTTT
GTGTGCGGCG CCAATAAGGA TGGCTACCAT TACACCAACG CCAACTGGAG CGATGCCGCC
GAACATAAAG TTGTCGATAT ACGCAATGTG GTTATTGGCG ACCCAAGCCC CTGCGGCAAG
GGCACTATTG ATATCAAACG CGGTATCGAA GTGGGCCACA TATTCCAGTT GGGCACCAAA
TACTCCGAAG CCATGAAAGC CAGCGTGCTG GATGAAAACG GCAAAGACAA AACCATGATT
ATGGGCTGTT ACGGTATTGG TGTTTCTCGT ATTGTTGCCT CTGCCATTGA GCAGAACTAC
GATGACAACG GTATTATTTG GCCAGATGCC ATTGCCCCCT TCCACGTGGC AATTGTGCCT
ATCAACATGC AAAAGTCTGA AGCCGTAGCG CAAAAGTGTG AAGAGCTTTA CGCACAACTA
AATCAACTTG GTTATGATGT GCTGCTAATG GATGAACCCA AAGCGCGCTT AGGCGGCATG
CTTGCCGACA CAGAGCTAAT GGGTATTCCA CACCGAATTG TTGTGGGCGA CAGAGGCCTA
GAAAAAGGCC AGCTTGAATA CAAATGTCGC CGCGACAGCG ACAGCCAAGA CATTGCCGTA
GATGACATTA TTGAATTTAT TAACAATGCT GTTAAAACCG GCAAATAA
|
|---|
| Protein sequence | MRASKYLIAT YKETPADAEV ISHQLMLRAG LIRKLASGLY NWLPAGLRVL RKVETIVREE
MDRAGAQEVL MPVVQPAELW EESGRWQQYG PELLRINDRH DRAFCLGPTH EEVITDLIRN
ELKSYKQLPA NFYQIQTKFR DEVRPRFGVM RAREFLMKDA YSFHASQECL QETYDIMHAA
YCKIFDRIGL DYRPVLADTG SIGGTGSHEF HVLADSGEDD IAFSTESNFA ANVELAEALA
PAKQTAEPLP REEVATPNVK TIEDVAKLLD VPTTQTVKTL IVKGVENEDG KHTLVALVLR
GDHALNDIKA IKLAHVANPL EFADESGIKA AVGAEVGSLG PIGLSMPVYV DRAAAALVNF
VCGANKDGYH YTNANWSDAA EHKVVDIRNV VIGDPSPCGK GTIDIKRGIE VGHIFQLGTK
YSEAMKASVL DENGKDKTMI MGCYGIGVSR IVASAIEQNY DDNGIIWPDA IAPFHVAIVP
INMQKSEAVA QKCEELYAQL NQLGYDVLLM DEPKARLGGM LADTELMGIP HRIVVGDRGL
EKGQLEYKCR RDSDSQDIAV DDIIEFINNA VKTGK
|
|---|
| |