| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0903 |
|---|
| Symbol | avtA |
|---|
| ID | 3965500 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 1165507 |
|---|
| End bp | 1166772 |
|---|
| Gene Length | 1266 bp |
|---|
| Protein Length | 421 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 637919965 |
|---|
| Product | valine--pyruvate transaminase |
|---|
| Protein accession | YP_526377 |
|---|
| Protein GI | 90020550 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3977] Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.176446 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.0000000925124 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGCCCTCCT TTCCTCTTTC GCCCTTTGGT GAGCGTTTAT CTGCACCTGC CGGTATTGTT
TCTTTAATGG ATGACCTAGG CGAGGCCCTA AACGTAAACC CTGATATTTT GTTTTTGGGC
GGGGGGAACC CTGCACGTAT CCCCGAGATG GAGCAGGCTT TCGCTCAAGC GTTGCAAGCC
ATAAGCGCTA ACCCAGAGCA ATTACATAAG ATGCTGGGGG TGTACCAGTC GCCACGAGGG
CACGAGGGCT TTATTGAGCG GTTAGTGCCT TTTTTGAATG AACGCTGCGG TTGGAGCATC
ACCAGCAAAA ATATAGCCCT AGCTAATGGC AGTCAGTCGG CGTTTTTTAT CTTGCTGAAT
ATGTTGGCAG TGCCCGCTAC CGCTAATACG CCCGCACAGA AAATTCACCT GCCCATGGCC
CCCGAGTACC TCGGTTATAG CGGGCAAACC GTCGCGCCAG ATATGTTTTG TGCTCATAAA
CCCCTTATTG AGCTGGTTGA GGGCAATCAA TTTCGCTACC GAGTCGATTT AGCGACTCTC
GCCAACACCC AAAATGTGGC TGCCTACTGC GTATCTATGC CTACCAACCC CACGGGTAAC
GTGCTGGCGC GTAGTGAAGT AGAGGCATTG CAGGTGCTTG CGGCGGAACA GCAAGTACCG
CTTATATTAG ATTGCGCTTA TGGTGCGCCG CTTCCTGGAA TTGTGTATCA AGAGGTTGCC
TTGCCGTGGT CAGACAATAG CGTGTACATG TTTAGCTTAT CCAAGCTTGG GTTACCTGGC
GCGCGAACAG GCATCATTGT GGGGCCGGAA GAGCTGGTAG AGCAGTTTGT GAATGCCAAT
ACCGTAGCTA GTCTTGCCAA TGGCAATGCA GGCCCAGCCC TAGCTGAGGC CCTAATGGCG
CAGGGGCAAT TAGAGCCATT AATTCAGCAT ACCGTAACCC CTTTTTACCT TGCCAAGCGC
AACCACATGC TAGGTGCGTT AGAGCAGGCC CTAGCAGGGC TGCCCTGCAG AGTGCATTGT
GCCGACGGTG CCTTTTTTGT GTGGCTCTGG TTGCAAGATT TGCCTATAAG CGCCCATGCG
CTCTACCTGC AAATGAAAGC CGAGGGGGTA TTAATTATGC CTGGTGAGCC TTTCTTTTTT
GGCTTGGATG CACCGTGGGA CCATGCAGAG CAGTGTATTC GCTTGTCTTA CTGCCAAAGT
GATGAGGTGA TTGTAAAAGC GGTAACCATT TTAGGGCGGG TATTGCGCAA AGCTTATGGG
GCTTGA
|
|---|
| Protein sequence | MPSFPLSPFG ERLSAPAGIV SLMDDLGEAL NVNPDILFLG GGNPARIPEM EQAFAQALQA
ISANPEQLHK MLGVYQSPRG HEGFIERLVP FLNERCGWSI TSKNIALANG SQSAFFILLN
MLAVPATANT PAQKIHLPMA PEYLGYSGQT VAPDMFCAHK PLIELVEGNQ FRYRVDLATL
ANTQNVAAYC VSMPTNPTGN VLARSEVEAL QVLAAEQQVP LILDCAYGAP LPGIVYQEVA
LPWSDNSVYM FSLSKLGLPG ARTGIIVGPE ELVEQFVNAN TVASLANGNA GPALAEALMA
QGQLEPLIQH TVTPFYLAKR NHMLGALEQA LAGLPCRVHC ADGAFFVWLW LQDLPISAHA
LYLQMKAEGV LIMPGEPFFF GLDAPWDHAE QCIRLSYCQS DEVIVKAVTI LGRVLRKAYG
A
|
|---|
| |