| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0307 |
|---|
| Symbol | |
|---|
| ID | 3968575 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 378394 |
|---|
| End bp | 380826 |
|---|
| Gene Length | 2433 bp |
|---|
| Protein Length | 810 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637919369 |
|---|
| Product | peptide ABC transporter permease |
|---|
| Protein accession | YP_525783 |
|---|
| Protein GI | 90019956 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
|---|
| TIGRFAM ID | [TIGR03434] Acidobacterial duplicated orphan permease |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.341925 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.050461 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTATGC TAAAAGACAT ACAGTTTGCC CTTAGAATGC TAGCAAAAAA CCTAGGCTTT
AGCGCATTAA CGATAACGGT CATCGCGCTA GGTATTGGTT TAAGCGTATT TTTATTCTCG
ATGTTTAACA CCATACTGTT TAAAGATTTG CCCTTTAAGG ACGGCGATCG ACTAATTCAA
ATAAATAAGT TTCAAAATAA TAACTACGTA TGGGGCGGCT TAAACCTGCA CGATTTCGAG
GAGGTGCGCA GCGCACTTAG CCACCTGGTT ACATTTGCTG CCTACCAAGA TACCTCGGTT
ACTGTGGTAA GCAGCGATGG TGCGCGCAGG TTTGAATCGG TTAGCGCAGA GGCTGATTTT
TTTGGATTTA CCAATACCAC ACCACTCATT GGCCGCACAT TTACCCAAGA GGAAACCCAA
ACAGGAAACC ATCTAGTAGC TGTAATTAAT TATGACCTGT GGCAAAACCT ATACGGCGGC
CAGCCCGATA TACTCAATAA AACCATTCGC CTTGGCAGCT ACAACCATCA AATAATTGGT
GTTATGCCAA AGGGGTATGC CTTTCCAGAA AATGCTTCTA TCTGGTACCC GCTTACTCAT
AAATACCAAC AACTAGCTCG TGAACACGCC CCTGCCGTTT ACGGTGTAGG TATGTTAAAT
AAAGGCGTAA CCGCAGAGCA AGTAAATGCC GCCTTAGTAC CGGTTATGCA GCGTATTGCA
TTACGCCACC CCAAAACGAA TTCGGGCATA ACAGCACGCG TTAGCTCGTT TGCACTAGCC
GATATGGATA ACGGCATAGC AGTAGTTTAC GTATTGCAAA TTGCCGCAGC ATTAATTTTA
TTGCTCGCCT CGATCAATGT GGGTAATTTA CTTTTTTCAC GCGCAGTGGA ACGCAATAAA
GAAACCGCCA TTCGCGTAGC ACTCGGCGCA CCACGCTATC GGTTAATGAG CCAACTGCTG
TGGGAGAGCG CCATAATCTG TTGTATTGGC GGCGCTATTG GCTTCTTACT TATGGGCTGG
GGTTTAGATT TAACATCTGC AATAGTACCC ACTTTTTTTA AAGACCCACT CCCCTTCTGG
TGGATATTCA GCATTGATGC ATTCACCATT CAATTATTTT TATCTGCTTT ACTGTTTACT
TTTTTATTTG CCGGTGTACT GCCCGCATGG AAGAGCACAA GCACCGATTT TAACGCAGTG
TTGCGCGACG GTACCCGCGG TGCGCAAAGT AAAGGCACAT CTAAGTTGAA CAAATGCTTA
GTAGTGAGTG AGATTTTTAT CTCGCTTGTT ATTCTTATTG CTGCGTCTAC CGCGGTTGTG
GGTGCCTACA ATGCCAGCCA TGCGGATTTT GGTATAGACA TAACCAACAC TACTGTCGCT
AAAGTAGAAC TAGATCAAAC ACGTTACAAC ACACCAGAAG ACCGCATAGA ATTCGTACAA
AAATTGCAGG CGTTTTTAGA AGCCGACTCC AGTATTGCTC AAGTTGCATT TTCTACATCG
TTGCCCGGCG AGTGGAGCGC AATACACGCT GTAGAAATAG AAGGCGAAGA ATATCAACGG
GATAGCTTAC TGAATTACCC ACAGGTTAAT TTTGTAAGAA CTACTGCGGG TTCGTTATCT
AAACTGGGAA TAGGTCTTAA AAATGGTCGC TACTTTAATA CTGGTGATGA CACTCTTGGC
AAAAACACCG CTATTGTTTC CCAGCGCTTT GCTGAACAGT ACTTTGCCAA TAGCAATGCA
ATTGGTCAGC GTGTAAAACT GCATATTAAT AGCAATAAAG AAACCGACTG GCTAACCATT
GTGGGCGTAG TCGCGAATAC ACTACAGGGC GCACCAGAAA ACAAACAAAG CGAACAACCT
ACTATTTATC GGCCCTTTGG CCAAATGCCT CATTTCTCTA CCAGTGTTGC TATACGCTCT
AGCGCCGACT TCAAAACAAC TGAAGCTGTA TTGCGCTCGG CTATTGCAAG TATAGACCCG
CAACTACCCG CTTATTATGT GCAAACATAC GATGCCCTTA TAAAACGATT AGGGGCACCA
CTGCGTTTTA TAAGCTCTAT ATTTTTTGTG TTTGGCATTG CAGCCGTTGC ACTTTCTGCC
AGTGGTATAT ACGGCGTTAT GGCCAATACC ATAAGCCAAA AAACCCAAGA GATAGGTGTA
AAACGTGCAC TGGGTGCATT AGATAGCCGC ATTACCAACG AATTATTATG GCGCGGTACC
AAGCAGTTAC TTTTAGGCGG TTTGCCCGGC GCACTTATAG GCTGTGCAAT GGGGTATGCA
CTGGCAAAAG TATTGGCAGT ACCTACCACC TTAATTTTGA TTGTCGCTGC CCTTATGATT
ACAATCGTAG CACTTGTAGT GGTGGTGGCC ATTTATGTGC CCACACGGCA CGCCCTTAAA
ATGGAACCTA GCGACGCGCT AAGATACGAA TAA
|
|---|
| Protein sequence | MFMLKDIQFA LRMLAKNLGF SALTITVIAL GIGLSVFLFS MFNTILFKDL PFKDGDRLIQ
INKFQNNNYV WGGLNLHDFE EVRSALSHLV TFAAYQDTSV TVVSSDGARR FESVSAEADF
FGFTNTTPLI GRTFTQEETQ TGNHLVAVIN YDLWQNLYGG QPDILNKTIR LGSYNHQIIG
VMPKGYAFPE NASIWYPLTH KYQQLAREHA PAVYGVGMLN KGVTAEQVNA ALVPVMQRIA
LRHPKTNSGI TARVSSFALA DMDNGIAVVY VLQIAAALIL LLASINVGNL LFSRAVERNK
ETAIRVALGA PRYRLMSQLL WESAIICCIG GAIGFLLMGW GLDLTSAIVP TFFKDPLPFW
WIFSIDAFTI QLFLSALLFT FLFAGVLPAW KSTSTDFNAV LRDGTRGAQS KGTSKLNKCL
VVSEIFISLV ILIAASTAVV GAYNASHADF GIDITNTTVA KVELDQTRYN TPEDRIEFVQ
KLQAFLEADS SIAQVAFSTS LPGEWSAIHA VEIEGEEYQR DSLLNYPQVN FVRTTAGSLS
KLGIGLKNGR YFNTGDDTLG KNTAIVSQRF AEQYFANSNA IGQRVKLHIN SNKETDWLTI
VGVVANTLQG APENKQSEQP TIYRPFGQMP HFSTSVAIRS SADFKTTEAV LRSAIASIDP
QLPAYYVQTY DALIKRLGAP LRFISSIFFV FGIAAVALSA SGIYGVMANT ISQKTQEIGV
KRALGALDSR ITNELLWRGT KQLLLGGLPG ALIGCAMGYA LAKVLAVPTT LILIVAALMI
TIVALVVVVA IYVPTRHALK MEPSDALRYE
|
|---|
| |