| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0078 |
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| Symbol | |
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| ID | 3967162 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 99134 |
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| End bp | 100831 |
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| Gene Length | 1698 bp |
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| Protein Length | 565 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637919137 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_525554 |
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| Protein GI | 90019727 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGGAA TAAGCGGGTA CAAAGAAAAA TACCTCGCCG CTTTAGACGA GCAGGAAAAG
CTCGAGCGCA AACACGCACT GCAATTAGAC TTGTTGCGTA AAACCATTGT GCACTTAAGT
GTGGCTGCTA AGGGGCAGGA GTCCAAATTA GACGCATCCC TTATTGCGCT GCAAAACAAA
ATGCGCGGCG GCAGTGGTGC AGATGTGTTT GAGCAGATGG AGCGAGTGCA GCGGGCAGTG
GGTGAGTTTG ATCGCGAGCG CGAGCAAGAG TTACAGCGGG TGCTAGATTG GTTTAAGTCG
GCTGTGGATA ACTTAATGGA ATTAAGTGTG CCCGCCGATT TGCGCAGCCA GTTGTCGCTG
TACAAAAAGG GCCTAAAATC GCAGTTAACC AGTTATCGTG CATTTGGCGA AGCGGTAAAC
GAACTAAGTG CATTGCAAAA GCGGGCTCTA GCAGCGGCAG CCAACCCAAA TAAGGGGTTG
TGGCAGCGTA TTAAGGGTGG CAAAACCCTA GAAGATAACG CGCCAGCCAA GCCCAGCCGC
ACCTCAGCCG AGCCTGTCGA AGCGCCAGTC GAACGTGATT TGGGGCCGAA AGAGTCGGTA
ACAAAGACCC CGCCCATTAC GCAAGTCGAT GATCCCGCCG CAGAAGATTC CTACCCCAAA
GTAGCCCAGC GCATTAACGC CACACTAAAG GCATTAGTTA CCAGTATCGA GCCCAACGAT
ATGGTGCGCA GAAAAGTCGA GATTGTGCGC GACCGTATAG ACCGGGGTAT GGATTGGTTT
GCGCTGGCCG TAACCCTAGA AGATATTCGC GATATATTAA TGGCGCGCTA CTTGGCGGCA
GATAAAGCGT TTAGCGAATA CTTGCTGAAT ATAAACCGCG AGCTGGTATC TATAAGCGAG
GCGCTGGGTG TAGCAGAAGA TGCAGAGCAA CAGCGCGGTG GTGCGGCCGA AGCGCTTACG
GCGAGCGTGA GCAAATCTGT TAAGCAGCTG CAGGCGGATG TTGCGAAATC CAATAGCCTG
CCAGATCTGC AATCGACGGT TAGCGACCAT ATTCGTACTA TTCAAAATGC GCTTTCCACC
TTTAAGCAGG CGCAGCCGGC GCCCAGTCAA AGTTTGTCGG CCCAGCTTAA GGCGCTCATG
GATAGGGTGA AAACAGTAGA AGAGGAATCG GAAAAATCCC GCGCGCAATT GGAAGAGCAG
CGCTATAAAG CCACCCACGA CCCCCTAACA AGCCTGCCCA ATCGCGAAGC CTATAACGAA
CGCGCCTTTC ACGAGCTGCA CAGGTTTAAG CGCTATGGCC ACCCTTTAAC ACTGGCCGTG
TGCGATTTAG ATCACTTTAA AAAAATTAAC GATACCTTTG GCCATCAAGC GGGGGACAAA
GTATTAAAGC TAGTTGCTCA AGTGGTATCT ACACGCTTGC GCAATGTAGA TTTTGTGGCC
CGCTACGGCG GCGAAGAGTT TGTGTTAGTT ATGCCAGAAA CTGATGCCGA GCAGGCTAAA
ACTGTGCTGG ATAAAATGCG AGCTGCCATT GCGAAAACGC CATTTCGGTT TAAAGATAGC
CCGGTAACTA TCACTATGTC ATTCGGCATA GTACAGTTTC GGGGTGAGGA TAGCGTCGAG
TCTGCCTTTG CGCGCGCAGA CAAAGCCTTA TACGAGGCGA AGGCAAATGG CCGCAATCAA
TGTGTTATTG CACCTTAA
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| Protein sequence | MTGISGYKEK YLAALDEQEK LERKHALQLD LLRKTIVHLS VAAKGQESKL DASLIALQNK
MRGGSGADVF EQMERVQRAV GEFDREREQE LQRVLDWFKS AVDNLMELSV PADLRSQLSL
YKKGLKSQLT SYRAFGEAVN ELSALQKRAL AAAANPNKGL WQRIKGGKTL EDNAPAKPSR
TSAEPVEAPV ERDLGPKESV TKTPPITQVD DPAAEDSYPK VAQRINATLK ALVTSIEPND
MVRRKVEIVR DRIDRGMDWF ALAVTLEDIR DILMARYLAA DKAFSEYLLN INRELVSISE
ALGVAEDAEQ QRGGAAEALT ASVSKSVKQL QADVAKSNSL PDLQSTVSDH IRTIQNALST
FKQAQPAPSQ SLSAQLKALM DRVKTVEEES EKSRAQLEEQ RYKATHDPLT SLPNREAYNE
RAFHELHRFK RYGHPLTLAV CDLDHFKKIN DTFGHQAGDK VLKLVAQVVS TRLRNVDFVA
RYGGEEFVLV MPETDAEQAK TVLDKMRAAI AKTPFRFKDS PVTITMSFGI VQFRGEDSVE
SAFARADKAL YEAKANGRNQ CVIAP
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