Gene Sde_0038 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_0038 
Symbol 
ID3968171 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand+ 
Start bp44801 
End bp45424 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content45% 
IMG OID637919097 
Productcytochrome C oxidase assembly protein 
Protein accessionYP_525514 
Protein GI90019687 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG3175] Cytochrome oxidase assembly factor 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value0.379373 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCACAAA GCGAAGATAA AAAGGCAGTC ACACTCACCA GTTTTAAACT GGTTATCTTC 
GCTATTGCTA TGTTTGCATT TTGTATGTGG GTATTACCCC CGCTTTACAC ATTGTTTTGT 
GAAGTGACTG GACTAAACGG TAAAACTAAA GGCCAGTATC AAGTGACAGA GGTGCAAGTC 
GATACCAGTC GTTTGGTTAA GGTGCAGTTT GTGGCCACTA AAAACGAAAA CATGCCGTGG 
GCGTTTGCGC CGGCAGAGCG TATTTTAGAG GTACACCCAG GGCAAGCGGT TACTACGCAT 
TTTGTAGCTA GCAACCCCAC GGAAAACATC ATGGTCGGGC AGGCTGTGCC AAGCATGGTG 
CCACACAACG CTACCGACTT TTTTCACAAA ACAGAGTGTT TTTGTTTTAA CCAACAAGCG 
TTGGCGGCCG GCGAAACGGC TGAATTGGGC CTACAGTTTA TAGTGGACCA GGAAATTCCT 
AAGGGTGTGA ACACAATAAT ACTGTCGTAC ACACTTTTTG ATGTAACGGA AAATTCGAAA 
GATATTGTTG AGCAAAAACG GCAGGAGCTA ACCACTGCAA CGCAAGCTGC AGCAGAGCTA 
ATAACGAATA ACATAAAACT CTAA
 
Protein sequence
MSQSEDKKAV TLTSFKLVIF AIAMFAFCMW VLPPLYTLFC EVTGLNGKTK GQYQVTEVQV 
DTSRLVKVQF VATKNENMPW AFAPAERILE VHPGQAVTTH FVASNPTENI MVGQAVPSMV 
PHNATDFFHK TECFCFNQQA LAAGETAELG LQFIVDQEIP KGVNTIILSY TLFDVTENSK 
DIVEQKRQEL TTATQAAAEL ITNNIKL