Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_2314 |
Symbol | |
ID | 3964309 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | - |
Start bp | 2537371 |
End bp | 2538375 |
Gene Length | 1005 bp |
Protein Length | 334 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637917131 |
Product | pseudouridine synthase, RluD |
Protein accession | YP_523563 |
Protein GI | 89901092 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.651442 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCGAAT TGATTATATC GGGCGGGCCT GATAGCGAAG AACCCGAAGA CCGCGGCGAC ACCGGGCCAG ACGTCGAATT GCGTCAGCTG GTTTTTGGTT CGGTCCAACA TGGACAGCGT CTTGACCGGG CGCTGGTTGA GTTGGTGCCG GAATTTTCGC GCAGCTACTT GCAGCAGTTG ATTGATTTGG GGGGCGTCAC CATCAATGGG ATCGTGATTC ACAAGCCGTC AACGCGAGTC AAGGCTGCAG ATGTCGGAAC GATTGAATTG CGACCAACAC CCCAAAGTCA GGCCTTCAAG CCGGAAACAA TGGCTCTGAA TGTGGTGTTT GAGGATGAGC ACTTGATGGT GATCAACAAG CCGGCGGGTC TGGTGGTTCA CCCCGCCCCC GGCAACTGGA GCGGAACACT GCTCAACGGC TTGCTGGCCC GCGACGCGAA GGCCATGAAC TTGCCGCGCG CCGGGATTGT GCATCGGCTG GACAAAGATA CCAGCGGTTT GATGGTGGTG GCCCGGACAC GCCCGGTGAT GGATGCCTTG ATACGATCCA TTGCGGCGCG CGAGGTCAGC CGCCAGTACG TGGCATTGGC CCATGGGCCC TGGACGGGTA ATCGTCGGGT TGAAATCAAC GCGCCGATCG GCCGGGATCC TCGCAACCGC TTGCGTATGG CGGTGGTGGA TTTGGCCAGA AATCCCGGTA AACTGGCCAG AACAGATGTT GAACTTCTTC AGAATTGCGA CCAGGGATGT TGGGTTCTGT GCACCTTGCA CACAGGTCGA ACCCATCAGA TTCGCGTTCA CATGGCAATG ATCGGCCACC CGCTGGTCGC CGATGTGCTT TATGGGGGGC GTGCCGAGGC GGGTATGCAA CGGCAGGCCT TGCATGCTTG CCGTCTGGCT TTTACCCACC CGGTGACATT GGAGTCGATG GTGTTTCAAG CCAGCTTGCC CGTGGACTTG AATCTTGCGC TGGCAAACTG GGGCCTCAGT TACAATCAAA CATAA
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Protein sequence | MTELIISGGP DSEEPEDRGD TGPDVELRQL VFGSVQHGQR LDRALVELVP EFSRSYLQQL IDLGGVTING IVIHKPSTRV KAADVGTIEL RPTPQSQAFK PETMALNVVF EDEHLMVINK PAGLVVHPAP GNWSGTLLNG LLARDAKAMN LPRAGIVHRL DKDTSGLMVV ARTRPVMDAL IRSIAAREVS RQYVALAHGP WTGNRRVEIN APIGRDPRNR LRMAVVDLAR NPGKLARTDV ELLQNCDQGC WVLCTLHTGR THQIRVHMAM IGHPLVADVL YGGRAEAGMQ RQALHACRLA FTHPVTLESM VFQASLPVDL NLALANWGLS YNQT
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