Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_1897 |
Symbol | |
ID | 3963226 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | - |
Start bp | 2036027 |
End bp | 2039293 |
Gene Length | 3267 bp |
Protein Length | 1088 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637916717 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_523154 |
Protein GI | 89900683 |
COG category | [E] Amino acid transport and metabolism [R] General function prediction only [T] Signal transduction mechanisms |
COG ID | [COG0591] Na+/proline symporter [COG2200] FOG: EAL domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCGGCCT GGGTCATCCT TTTCTCCGTC GCAGTCTATC TGGGACTGCT CTTCTTCATC GCCTACCGCG GCGACAAGGC GGCCGATGCC GGACGCAGCC TGATCGCCAG CCCCTATGTG TATGCCCTCT CACTGGGCGT CTACACCTCC GCCTGGACCT TCTACGGCAG CGTCGGGCGC GCCGCCACCA GCGGTATTGG CTTCCTTCCC GTCTATCTCG GACCCACCGT CATGATCGCC CTGTGGTGGA TGGTACTGCG CAAGATCATC CGAATCTCCA AGGACAACCG CATCACATCG CTGGCCGATT TCATTTCATC ACGCTACGGC AAGAGTGCGG CGCTGGCCGG ATTGGTCACG GTGATCGCAT TGGTCGGCGT CACACCCTAC ATTTCGCTGC AACTGAAGGC GATTTCCACC AGCTTCGGCA TCCTGCGCAG CTACCCCGAC ATCCTGTTGC TGGCACCGCC GCAGCCGCCG CAGAGCATCT GGCACGACAC GGCGTTTTAC GCGGCCCTGA TCCTGGCGGC GTTCACCATC GTTTTCGGCA CCCGCAAGAT CGACGCCGCA GAGCGTCACG AGGGCCTGGT GGCCGCGATT GCCTTCGAGT CGTTGGTCAA GCTGCTGGCC TTTCTAGCAG TCGGCATCTT CGTCACCTGG GGCATGTATG ACGGCGTGCG TGACATCTTC GCCCGTGCCG CGCAAGTGCC GCGCATCGCT GAAGTCTTCA CCATTGGCGG CTCGACCGAG GCCTACCGCG GCTGGACCTC GCCCGCCGAC GCTGCCACTC GGCTGGCGTT GGCACCGGGC ACAGTCATGG ACATCTACCA GAGCTGGGCC GAGCTGTTCT CGACAGCCTT CGTCGGGATG CTGGCCATCA TGTTCCTGCC GCGCCAGTTC CAGATCGCCG TCGTTGAGAA TGTCGACGAG GCACATCTGA ACAAGGCGAT CTGGCTCTTT CCCCTTTACC TCTTCCTGTT CTCCCTCTTC GTCCTGCCAA TCGCCATGGG CGGCCTGTTG CATTTTGGCA CCAGCGTCAA TCCTGATGCC TTCGTCCTGA CCCTGCCCCT GGCCGGACAG CAGAAAGCAC TGGCGCTGCT GGTCTTCCTC GGCGGCTTCT CGGCCGCCAC CGGCATGGTG ATCGTCGAGA GCATCGCCCT GTCGACCATG GTCTGCAACG ACCTGGTCAT GCCGATCTTG CTGCGCATCA AGGCGCTGCG TCTGACCGAG CGCGCCGATA TCTCCGCCCT GCTGCTGGCG ATCCGTCGCA TCACCATCGT GCTCGGCCTG CTGCTCGGCT ACACCTATTA CCGGCTGGCA GGCGAGGCTT ACGCGCTGGT GTCGATTGGC CTCATTTCCT TCGCCGCCGT CGCCCAGTTC GCCCCGGCGC TGCTGGGCGG CATCTACTGG AAGGGCGGTA CGCGAAGCGG CGCACTGTCC GGGCTAGGCG CCGGCTTCCT GGTCTGGGCC TATACGCTGA TGCTGCCGGC TTTCGCCCGC TCCGGCTGGC TGCCCATGGC GCTGCTGGAA CACGGGCCGT TTGCCATCGC GCAGCTGCGC CCGCTTGCCC TGTTCGGCCT GGACGGGCTC GACGAAATCA GCCACGCCAT GCTCTGGAGC ATGCTGGCCA ACGTCGGCGC CTACCTGACG GTGTCGATCA TGAGCGGGCA GAGCCTGGTC GAACAGACGC AGGCAGCGCT GTTCGTCGAC GTCTTCAAGC ATGGCCGCGG CGCCGAGAGG GTCTGGCGCG CGAGCGGCTC GCTGCTCGAT CTGCACACGC TGATGGTGCG TTTTCTTGGC GCCGAGAACG CCCGCCAGGC GCTCGTTGCC TACGCCCGCC AGCGCGGCCT GGAATGGCCG CAGGAGATCG ACGCCGAGCT GTCGCGTTAC TGCGAGGCGC AACTGGCGGG CGCCATCGGC ACCGCCTCGG CAAGGGTCAT GATTGCGTCA GTGATCGAGG AAGAACTGCT GCGCGACAGC CTCACCGGTC TGCCCAACCG CGCGCTGCTT CTGACCCGGA TCGACGATGC CATGAAACGC ATCCAGATCG AATCCAGGCG CGGCTTTGCG CTGGTGTTCC TCACGCTTGA CCGCTTCCGC ACGATCACCG ACAGCCTGGG CGGCGCCTAC GGCGACCAGT TGCTGATCGC CATCGCGCAA CGCCTGGGTA CCGGCCTGCG CCCCGGTGAC ACGATCGCCC GCATCGGCGG CGAAAGCTTC GCCATCCTCC TCGACGAAAC CAAGGACGCA GAGGTGGCGG CACGTTACGC CGAGCAGCTG CAATCTGCGC TGGCGGTCGG CTTCAACCTG GAGGGGCATG AACTATTCAC GACCGCCAGC ATCGGCATCG TTCTTGGCCA CTCGGGCTAC GTCGACGCCG GCGAGCTCCT GCGCGACGCC GAGACGGCCA GCCACAACGC CGAGCGGCGC GGCGGGGCGT GCTACGAGTT GTTCGCCGCC GATATGCGCG AGCGTGTCGT CGCTCTTCTC GAAATGGAAA CCGAGTTGCG CCGGGCAGTG GCGCACGGCG AGGAATTCCT TGTCTATTAC CAGCCCGTGG TGTCGCTGCA AACGGGCCGG CTGGCGGGTT TCGAGGCCCT CGTTCGCATG CGTCGCCCCG ATGGCAAACT GGTACCACCG AGCGAATTTA TCCCGCTCAC CGAGGAGACC GGCCTCATCG TCTCAATCGG TCGCTGGGTG TTGACCGAGG CCTGCCGCCA GATGCACAGC TGGCAGCAAC GCTACCCGGA TCACCCGCCC ATGCAGATCA GCGTCAACCT TGCCGGGCGG CAGTTCACCC AGCCCGCCCT GCTGCAGCAA ATCGAAGCCG CGTTGGCGGA AACCGGCCTG GCCACCAGCA GTCTCAAGCT CGAAGTGACC GAGACCCTGC TCATGGCGCA CGCCGAGGAG GCGGCGGTGG CGCTGGAGAA ATTAAGCGCC CTTGGGATCA AGCTGCTGAT GGACGACTTC GGCACCGGTT ATTCATCGCT GTCCTACCTG TACCGTTTTC CGATCAACAC ACTGAAAATC GACGCCTCGT TCGTGCGCCG CATGGACGTT GACCGCAAGA GCGCCGACAT CATCCAGAGC ATCGTCACCC TGGCCCATGC CCTGAACATG GACATCATTG CCGAGGGGGT GGAGAATGCC GCGCAGTTGG CACAGTTACG GGCGCTGCAG GTGGAATACG GGCAGGGCTA CCATTTTGGC CAGCCGCTCG ATGCGGCGGC GGCCGAAGCG ATGATCGTCG CCCGGCCGGT CTGGTAG
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Protein sequence | MSAWVILFSV AVYLGLLFFI AYRGDKAADA GRSLIASPYV YALSLGVYTS AWTFYGSVGR AATSGIGFLP VYLGPTVMIA LWWMVLRKII RISKDNRITS LADFISSRYG KSAALAGLVT VIALVGVTPY ISLQLKAIST SFGILRSYPD ILLLAPPQPP QSIWHDTAFY AALILAAFTI VFGTRKIDAA ERHEGLVAAI AFESLVKLLA FLAVGIFVTW GMYDGVRDIF ARAAQVPRIA EVFTIGGSTE AYRGWTSPAD AATRLALAPG TVMDIYQSWA ELFSTAFVGM LAIMFLPRQF QIAVVENVDE AHLNKAIWLF PLYLFLFSLF VLPIAMGGLL HFGTSVNPDA FVLTLPLAGQ QKALALLVFL GGFSAATGMV IVESIALSTM VCNDLVMPIL LRIKALRLTE RADISALLLA IRRITIVLGL LLGYTYYRLA GEAYALVSIG LISFAAVAQF APALLGGIYW KGGTRSGALS GLGAGFLVWA YTLMLPAFAR SGWLPMALLE HGPFAIAQLR PLALFGLDGL DEISHAMLWS MLANVGAYLT VSIMSGQSLV EQTQAALFVD VFKHGRGAER VWRASGSLLD LHTLMVRFLG AENARQALVA YARQRGLEWP QEIDAELSRY CEAQLAGAIG TASARVMIAS VIEEELLRDS LTGLPNRALL LTRIDDAMKR IQIESRRGFA LVFLTLDRFR TITDSLGGAY GDQLLIAIAQ RLGTGLRPGD TIARIGGESF AILLDETKDA EVAARYAEQL QSALAVGFNL EGHELFTTAS IGIVLGHSGY VDAGELLRDA ETASHNAERR GGACYELFAA DMRERVVALL EMETELRRAV AHGEEFLVYY QPVVSLQTGR LAGFEALVRM RRPDGKLVPP SEFIPLTEET GLIVSIGRWV LTEACRQMHS WQQRYPDHPP MQISVNLAGR QFTQPALLQQ IEAALAETGL ATSSLKLEVT ETLLMAHAEE AAVALEKLSA LGIKLLMDDF GTGYSSLSYL YRFPINTLKI DASFVRRMDV DRKSADIIQS IVTLAHALNM DIIAEGVENA AQLAQLRALQ VEYGQGYHFG QPLDAAAAEA MIVARPVW
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