| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_4295 |
|---|
| Symbol | |
|---|
| ID | 3959889 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007901 |
|---|
| Strand | - |
|---|
| Start bp | 56369 |
|---|
| End bp | 61549 |
|---|
| Gene Length | 5181 bp |
|---|
| Protein Length | 1726 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 637909502 |
|---|
| Product | helicase-like |
|---|
| Protein accession | YP_515979 |
|---|
| Protein GI | 89885781 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG4646] DNA methylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACACAAA CCAACTTATG GCTTCCCGGC TTTGAATTCG CCGATGCCCT TTTTGGGCTC
ACGCCAATTC AGACCGAAGT TCCCATCGAG CCCGTCTCGA TTACTCAACA AGAGCCGCAG
AGTACCGAAA TTCAAGAGGT CCCCTGTTTC GATGCGTCCT CAACCGAAGA CACATTAACC
CAAGCAGAAT CATTGCCTGA AAATGCTGCA CCTTCCCTCG TCATGGCCCA ACCGGCCACA
GCGCAGGATG TTGGTCTAAG CGAGCCACCC TGGCCCTTGC TGGCCAAAGA CGTACATGAA
GACCTACGTG GTCAAGTGAC AAAATTCGAC GCCAACGTTG AAGCCATTGA GCTCCTTCGG
GTGCTCGAAG CCGAGATGAC GCCGCCCACC CTCGCGCAGC GTCAGACACT CAACCGTTAC
ACCGGCTGGG GCGGGATCAA ACATCCCTTT GATAGCCCAT ATCATCTGGC CCAGGAGTGG
GTCAACCGCG CCAAACAACT CAAGTCACTT CTCAGCGAAG ACGAGTTCGA AAGCGCAAAG
GAGAGCACGC TCAACGCGCA CTTCACGCCC ATTCCTGTCA TCGACCAACT CTGGACGATA
CTTCGCCAAA TCGGCTTTAC CGGTGGGCGG ATTATTGAAC CTGCCGGCGG CATAGGTTTT
ATGCTTGGCG CAATGCCAAG CGACATCGCG CAGCGCTCCA GCGTAACGGC GGTAGAAATT
GACGATCTGA GTGCTCGTTT CCTGAAAGTG CTCTACGGTA GTCATGCCAA TGTGCTGCAC
ATGGGCTTTG AAAAGACGAA CCTGCCAGAG CAGTATTTCG ATCTGGTCAT AGGCAACGTT
CCTTTTGGGA ATTACAGCGT CGGAGATCTT CGCCGTAAGA CTTATTCAGA CTGGGCTATT
CACAATTACT TTGTGGGACG TTCGCTGGAT TTGGTCCGTC CCGGTGGCCT CGTTGCTGTG
ATCACGTCGG CGTACTTCAT GGACAACAGC AATGACAAAG TTCGCGACGT AATTGCCAGA
AAGGCCAAGC TGCTCGGAGC AATCCGTTTG CCAGCAGGCA CGTTCTCAGA AATTGCTAAC
ACTGACGTGG TGGCCGATCT GGTCATCCTC CAAAAGAGAT CATCCACGGA AACTCTCACG
CGCGAGGAGC GGGAGAACTG GGTAGAGACC ACATTGTTGC TGGACGAAGA CGGCACAAAA
ATGCGAGTAG GCAACTACAC CCAAGGACAG AATGTCAACA GCTACTGGAT GAAAAACCCA
CAAGCTGTTG TTGGCGTCTG GACTGAAATC AGCAGGAATC AGGGACAGTC AATTGTTCCA
AAGCTTCCCA AGGGCGCCGA TCTCATGGTT GAAATGGAGC GCGCGTCCAA GGTCATTCCG
CAAGGGGTCT ATGCCCCTGC AACGCAGCAA GTCAAGGAAG TCTTGCTGGC AGTCGCTGAC
GGTTCGAACG CGGTACTGCC GGGGTCGTAT GTGATCGAAG GTGGTGACAT CTACCGATTC
AATGGACACA GCCTTGAAAA GACCGGGGTC AAAGGCAAGA AAGCCGAACG CATCGCTGGG
ATGGCGCTCA TTCGCGATAC AGCGCAGGCC CTGATCAAGG AACAATGCAA GTCAGACGCC
GCCGAATCCG TAATGTCAAC CTTGCGCTTT CAACTCAACG TGCGCTATGA CAGCTTCATC
GCGAAGCACG GGTTCATCTC TACCAAGGGA AACCGTCAGG CGATGGGATC TGACCCAACC
TGGCCCCTGT TGCTCTCCCT TGAGATGTAC AACCTCGAAG AAGAAACGGC CAGCAAGGCA
GATATATTTT TCGAGAGAAC GATCTTCTCC ACAGCGATAC CAAAGTCAGC CGACAACGCC
GAGGATGCAC TGGCGATCTG CGTGGCCGAG TTAGGCTGCA TTGACGTTGA CTTTATCGGC
CAATTACTGG CTGCCGATGG CAAACGGGCT CTCGACGGAC TGGCTGCCAT CGGCGCAGTG
TTCGTCGATC CGATGACCAT GGCGTATCAG ACGGCGACAG AGTATTTGTC GGGCAACGTC
CGCGACAAAC TCGTGATTGC GCAATCCGCC GGACTGGCCT TTGACAGAAA TGTCCGCGCG
CTGGAAGAAA GTCTGCCCCC CGATCTCAAC CCAACTGACA TCGATGTCAT ACCGGGAGCG
GCGTGGATTC CAATCGATGT GACCGAGGCG TTCCTCAGAG AACTGGTTGC GGAAGAATGG
AAGGGATCGA ACTGGGCAAG CGTCAACATC GGCTATGAGT TGACCACTGG CACATGGAGT
GTCAAGTCCA GTGGGCCCAC GGGAACCGCC ATGTGCGTCA CCTGGGGCAC TTCACGGATA
AACGGGTTTG CACTGTTTGA AAAGTGCATG AATCAGATTG ACGCGGAGGT CTTCGATAGC
TTTGGTGACA GCCCTGTTCT GAATGCGTCC GAAACGGCGC AAGCAAGGAT GAAGCAAGAT
GAACTCCGTG CCGAATACGC ACGGTGGATT TGGTCCGACG ACGACCGCGC CAAGCAATTG
TGCCGGCTGT ACAACGACAA GTACAACTGC TGGGCGATAC GCAAGTATGA CGGTTCAAAC
CTACGACTGC CAGGATACAG CCAGTCGCTG GCACTGCGTC AATTCCAGCT CAACGCGATT
GCACGAATAG CCACTGGATG CAACACGCTG CTGGCGCACG TTGTCGGCGC AGGAAAGACC
ATCACCATGG TCTGTGGCTC CATGGAGCTA CGCCGACTGG GAATTGCCAA GAAGCCATTT
CATGTGGTTC CCAACCACTG CCTGGAGCAG TATTGCGCCG AGTTCATGCG GGCTTACCCA
AATGCATCGG TGCTGATGGC AACAAAAGCA GACTTCGAGA AAGACAAGCG ACAGACCTTT
GTGGCCAAGT GCGCAACGGG CAACTGGGAC GCAGTGGTGC TCACGCACTC CATGTTCGAG
CGGATCGCCG CAGATCAAGT GATTGTTGAG GACTACCTCA AACGCATACT GAGCGAATTG
CGCGCTGCCA AAGATGCCGG AGCGTTGGAC CGTACGGCAG CTCGCGCTGT CAATAAGTTC
ATAAAAGATT GGGAAGCCCG GCTTGAAAAG CTCCAGGCCA GCTGGAAAAA AGACCAGCTT
ATCTCCTTGT CGGAAACGGG CTGCGATTGG GTGTTCTTCG ATGAGTGCCA TGTCGCGAAA
AATCTGTTCC GGATTTCGAG CATGAAAAAC ATAGCCGGCT TGAGCAACAG CAATAGCCAG
CGATCATTCG ATTTGTTGCT CAAATGCGTT CAGCTCATGA GGCTGCACGG CGACCGCGAG
CGAGGCCTTT GCTTTGCTTC CGGCACGGTC ATAAGCAACA CCATGGCTGA ACTCCATGTA
GCGCAGCGCT ACTTGCAACC GTATGCGCTG GAGAAGGCAG GTCTCGAGAA ATTTGATGCT
TGGGCCGCGC AATTCGGCCG GGCTGTGAGC TCGATGGAAG TCAGCCCCGA CGGATCTAGC
TTCCGGCTCA ATAAGCGATT TAAGCAATTT GTGAATATGC CGGAACTGAT GGGTCTTTTC
AGGCAAGTTG CTGATATTCA GACCAAGGAA ATGCTCGACT TGCCAGTTCC AAAACTGGTG
ACCGGGTCCT ACCAGATATG TGCCGTTGAG CCTTCAAATG AGGTCAAAGA GTACGTCGCA
GACTTGGTGG AGCGTGTTGA GGCCATTCGT GACAGGCAGG TCAAGCCCGC AGAGGACAAC
ATGCTGGCGA TTACAGGAGA CGGACAGAAA GTTGCTTTGG ACATGCGTCT GATACGCCCC
AGAACACCAT TCGATCCGAA AGGAAAGGTG GCCATGTGCA TAGACAACGT CTACCGCATT
TGGGAGATGA CTGCGAGCTT TAAGGGGGCA CAAATCATAT TTTCGGATAT GGGAACTCCC
ACTGGACACT CGCTCAATCT GTATGAGGAC ATGCGGACCA GGTTGGTGGC CAAAGGTATT
CCACACCACG AGATCGCGTT CATTCACGAA GCGCAAACAC ACCACGCCAA GTCAGCGTTG
TTTGCCAAGG TTCGGGCCGG TACGATTCGC GTACTGATTG GCTCAACGTC AAAGTGCGGG
ATGGGTACCA ATGTGCAGAC CCGGCTGTAT GCCGTTCATC ACCTGACTAC CCCTTGGCGG
CCTTCGGATT TGCAGCAAAG AGACGGAAGA ATTGAGCGCC AGGGCAACAC CTGCGAGGCT
ATCGAGATAT GGAGGTACGT GACTTCCGGG ACCTTTGATG CCTACATGTG GCAGACGTTG
ACAGCGAAAG CGGGCTTCAT TGCCCAGGTC CTATCGGGTA ACGCTGAGGT TCGTTCTGTT
GAAGACGCCA TGATGGCGAC CTTGTCGTAT GACGAGGTCA AGGCCATTGC GTGTGGCAAC
CCCGCTGTGC GAGAAAAGGC AACCATAGAC GCCGAGATAA TGGGCTTATC GCTCAAATTG
AAGCATCACC GGGACAGTGT GTGGAATTCA AAAGAAGAAC TCTGGCGCTT ACCGATCAAG
ATTGCTGAAC ACAAGCGTCA GGCAGTCGAG TATGCGAAAT TCCACGAGCA AGTTCTGGCC
TCAGACGGGC AAGGTCGAGG CTTCGGGATG GTCGTCAATG GCAAGAAGTT TTCCGATCCT
GAAAAGATCG AGAAGATCAT CACCCTGAGC ATCAGGGAGC TGAAGGAACT CCAAAAGGCA
GGGTTGATCT CGGAAGAGAG GTTGATTGGA ACGCTTTGCG GAGTGGACAT CTTCTATGGT
CGCAGTTATG GTGATTTCAA AATAACAGCC CGCAGCAGCA ACGGTGGGGC CAGCATCGAC
ATTGGCACGT ACTCCACCGG GGATTCTGTC ATCCGCAAGC TCGGTGAGAT TGAACAGCGT
TTATTGGCTG TTGTGCAAGA CAACGAAAAT CGCGCGAATT ACCTGACTCA GCAGTTGCCT
ATTCTGGAGC GCATTGCGCA AAGTGAATTT GCAGACACAG GGAAGCTTGA ATCGCTGCGG
GCCCGTTCCA AAGAAATAGC CATTGAATTG GGTTTGCTCA AGGCGATGGC GGGAACCGAT
GGACAGGCTG ACGGAACCGA GATCAGTTCG GAACTTGCCG CAACACTCGC GGGGGAAGAC
GAATCTACAC AGGACGGCAC GGAAGCGTCC GAAGAAAACG AAGAGCACGA CGAATGTCTG
CTCACAGAAG CCTTCTGCTA A
|
|---|
| Protein sequence | MTQTNLWLPG FEFADALFGL TPIQTEVPIE PVSITQQEPQ STEIQEVPCF DASSTEDTLT
QAESLPENAA PSLVMAQPAT AQDVGLSEPP WPLLAKDVHE DLRGQVTKFD ANVEAIELLR
VLEAEMTPPT LAQRQTLNRY TGWGGIKHPF DSPYHLAQEW VNRAKQLKSL LSEDEFESAK
ESTLNAHFTP IPVIDQLWTI LRQIGFTGGR IIEPAGGIGF MLGAMPSDIA QRSSVTAVEI
DDLSARFLKV LYGSHANVLH MGFEKTNLPE QYFDLVIGNV PFGNYSVGDL RRKTYSDWAI
HNYFVGRSLD LVRPGGLVAV ITSAYFMDNS NDKVRDVIAR KAKLLGAIRL PAGTFSEIAN
TDVVADLVIL QKRSSTETLT REERENWVET TLLLDEDGTK MRVGNYTQGQ NVNSYWMKNP
QAVVGVWTEI SRNQGQSIVP KLPKGADLMV EMERASKVIP QGVYAPATQQ VKEVLLAVAD
GSNAVLPGSY VIEGGDIYRF NGHSLEKTGV KGKKAERIAG MALIRDTAQA LIKEQCKSDA
AESVMSTLRF QLNVRYDSFI AKHGFISTKG NRQAMGSDPT WPLLLSLEMY NLEEETASKA
DIFFERTIFS TAIPKSADNA EDALAICVAE LGCIDVDFIG QLLAADGKRA LDGLAAIGAV
FVDPMTMAYQ TATEYLSGNV RDKLVIAQSA GLAFDRNVRA LEESLPPDLN PTDIDVIPGA
AWIPIDVTEA FLRELVAEEW KGSNWASVNI GYELTTGTWS VKSSGPTGTA MCVTWGTSRI
NGFALFEKCM NQIDAEVFDS FGDSPVLNAS ETAQARMKQD ELRAEYARWI WSDDDRAKQL
CRLYNDKYNC WAIRKYDGSN LRLPGYSQSL ALRQFQLNAI ARIATGCNTL LAHVVGAGKT
ITMVCGSMEL RRLGIAKKPF HVVPNHCLEQ YCAEFMRAYP NASVLMATKA DFEKDKRQTF
VAKCATGNWD AVVLTHSMFE RIAADQVIVE DYLKRILSEL RAAKDAGALD RTAARAVNKF
IKDWEARLEK LQASWKKDQL ISLSETGCDW VFFDECHVAK NLFRISSMKN IAGLSNSNSQ
RSFDLLLKCV QLMRLHGDRE RGLCFASGTV ISNTMAELHV AQRYLQPYAL EKAGLEKFDA
WAAQFGRAVS SMEVSPDGSS FRLNKRFKQF VNMPELMGLF RQVADIQTKE MLDLPVPKLV
TGSYQICAVE PSNEVKEYVA DLVERVEAIR DRQVKPAEDN MLAITGDGQK VALDMRLIRP
RTPFDPKGKV AMCIDNVYRI WEMTASFKGA QIIFSDMGTP TGHSLNLYED MRTRLVAKGI
PHHEIAFIHE AQTHHAKSAL FAKVRAGTIR VLIGSTSKCG MGTNVQTRLY AVHHLTTPWR
PSDLQQRDGR IERQGNTCEA IEIWRYVTSG TFDAYMWQTL TAKAGFIAQV LSGNAEVRSV
EDAMMATLSY DEVKAIACGN PAVREKATID AEIMGLSLKL KHHRDSVWNS KEELWRLPIK
IAEHKRQAVE YAKFHEQVLA SDGQGRGFGM VVNGKKFSDP EKIEKIITLS IRELKELQKA
GLISEERLIG TLCGVDIFYG RSYGDFKITA RSSNGGASID IGTYSTGDSV IRKLGEIEQR
LLAVVQDNEN RANYLTQQLP ILERIAQSEF ADTGKLESLR ARSKEIAIEL GLLKAMAGTD
GQADGTEISS ELAATLAGED ESTQDGTEAS EENEEHDECL LTEAFC
|
|---|
| |