| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | NSE_0860 |
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| Symbol | |
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| ID | 3931870 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Neorickettsia sennetsu str. Miyayama |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007798 |
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| Strand | - |
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| Start bp | 762252 |
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| End bp | 765761 |
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| Gene Length | 3510 bp |
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| Protein Length | 1169 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637901015 |
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| Product | VirB6 family type IV secretion system protein |
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| Protein accession | YP_506727 |
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| Protein GI | 88608816 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3704] Type IV secretory pathway, VirB6 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.921754 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTAGAG TAGTTCTGGG CTTATTGCTT CTTTTAAGTG CTTGTGACAT GGGGTGTATT
TATCCTGGCG ATGGTGTAAG TGCAAACTTT ACAAATGTCA TTGTGCCAGC CTATCTAGAA
GGTATGGATC CCTCCAAGCC TAGTACATTG TGGGTAGATT CAGGCATCAA AATTAGAGAA
GGTGAAGAGG TACCCTTTGG TGTAATTGGT GACATAGATC TATGTGGAAA ACTTTTCAAT
AGAAAGGAAT TTGAAATATG TTCTGAATGG AATTGTCAAG TAATCGAGGT AGGTAATAGA
TTTTGTGCTA ATGGTGCTCC TGCAGGCATA CATAATCCAT CAGACCTTTC GGATGCTAAG
AATAAAGAAC CTCTATGTGA GAAAGCGTCA ACAACTCACG AGAGGTACTA TGTTGATACT
TACCTAGAGG TTTCACCGGG AGAGAAGGTG CTCTTTGAGT TGATACCAGT AGTCAGCGTC
AATCTAGTGG ATTGCGACAA TATACCACTC GGGTTTTCCT GGTATAACAA TGAAGATCTC
AAGGACGTAA AGGGAAAAAA GATGCAACTT GTTTCCGGAG GTGAGGTGGA TCCGGTTGCT
ATATGCAAAG CCGGTGGGGA GGTTCATCTA CAAAGGGGTG GGAATAAGTT GCAAGTGTTT
CTTCCTCCTT CTTTGAAGGG GGAGTTGTTG AATTCAGCTC TTGTTGGGAA CGGCTATACC
CCAAGAAGTA ACAGAGTAAT AGTTGGTAAT GGGGAAGGTA AGTGGATAGA GGCAGCTGCA
GTCGATATGC GGGTTATTGT TCCACATATT TTCTCTGATG AAAAGTTTTG TGATGCTGGT
TTCAAGAGTC AGGTTGATCA CGAAGAAATT CGCAAAGGGA AGAAGATAAG TTGGGAATAC
AAGTACAAGG ATTCTTGCGA TTCGAAAAAG GATGAGGGGA AGCTTAAGAG GTTCGAAACG
TACAAGGTAA ATAAAATGTG TGGAAATTTT ATTTCAGACA GTACGTATAA AGATGGAATA
TATAGTATCA GGTATGATGA AGACTTTGAT AGTTTGAATC CTTGTTTTCG TGCACGCAGA
AGGAACAAGT CAGACTTAGA GAGAGCGTGG GCTGATTTAC TTGTTGCGAA AATAGGTAGA
GCTGGCAAGG ATAAGTCTAC ACTATTGCTA AGTGACGATG AAGCTCAGTT GTGCATTTAT
AACATTGGTA CGGAAGAAAC AAATCTCTAC GGTAATAGGG TAAAAAGATG TGTTGATGTC
GGTGAGTATG GTGGATCTGT ACCATCATTG GAGTTGAATA CATGGTTTAC CATTCCGCGC
AGTATCAGTG GAGGAAGTCC GCTGCTCCTT GGGATTGCAG GTAATGAAGA TTCTTCAAAA
AATTCTGTAT ATTCAGGTTA CCGTGTAAGA GTGCGAAAAA GTTGCTCATA CCAAAACGGG
GAAAAACTTT ATGTCTATAT TGGTGACGGT CCGCCAAGTA TCGCCCCTGG TGTTTCACAT
CCAAATGTGC ATGAGCTTCG TTTCAATGCT GATACTCCGA AGAGGGCAGT TGTTAATCCA
CTAAATATCG ATTCGAGCAC TTATAGTCTC TCTTTCAACG GGAGTGGAAA GGTCTATTTT
GGTATAGCAG GGGCTGCCGA TAGCAGTTTG GTGAAAGCCG TAAAGACGGG AAAATACCTG
CCTAGTGAAG ACAATAAATA CACGGTCAGT ATAGTGCAAG AACGGTGGTA TCCAAACTTT
TCCGGCCCTT TTAACACGAT CTATCATGCT ATCGTAAAAC TGTTTTATGG GAAGGGTCAA
AAAAATCCAT ATGGTAAACC CGAAGCGACA GGAGTAATAG TACAAATTTA TAACGCAATT
GTTGGGAAAA TTGCACCTGC TGTTCAGGCA TTGATAGTGC TTTACCTCGT CACTTATGGG
CTGTCCTTTC TACTTGGGAT AATCAGAGAT CCAAGGTCAG ATGTTGTAAT GCGGGTGATG
AAGGTAGCAT TCATTTTGCT CTTAGTGAGC GATTATAGCT GGAAGTTCTT TGGCGAAACA
ATTTTTGATC TGTTTGTTAA TTCTTCTAAT GAGCTCATCT ACTATTTCAC TGGTAACCTT
AGTGGGAAAT ATTCTCCGGA TAGTACATTT GAATTTCTGG ATAGAACCGT TGGCGTGATA
ATAACAAACC AGTTTTGGTT AAGGATGCTA GCTCTTTTTC TTTCGGGTCC TGCTGGTTGG
TTTATCATGT CGATCATACT GTGGGGTGTG TTTCTCTTTT TTAGTTGCAT CATCGAGGCA
ATGGTGATCT ATCTCATGAT ATTGATTGCG ACAGGTTTAC TTTTTTTGTT GGCACCTATC
TTTATAACTT TCTTGATTTT CCAGAGAACA AAACCATTGT TTGAGGGTTG GCTGAAAATG
TTGATCTCTT TTGCTCTGCG TCCGATTTTT ATTTTTGGAA CCCTCGCATT ATTAAATGCA
GTAATGATGG CAACGCTATA CGGGGTGAAT AATTTTGGTG TCTGTCCTGG TTGCGTTGTT
TCCACGGATA TATTCGGGAG TGACTTATGC ATCATTAGTT CGCTCATACC TATGGGATTT
GATCCCGGAA TGGCTAGTAT GGACCGTTTC CTTATTCCTG GCAGTACCAA TTCTGGCTTC
ATGGGTCTTC CTGTGTCGTT GGTTTCAGTG ATAGTTTTTC TCTTGGTGGC TCATGCTATG
AAGAGCTTCC TGAAAATAAC GGATTCTATG GTGGACATGA TCACGGGTAC AATGATGGGT
TATACCGGTG TTACAGGTGG TGGTAGTCCT TCAGATGCAG GTCATGCTGC ATATCAAGCT
ATGTTGTCTG TTGTTGGTTT GGATGATGCA ACTCAGTCCG AAATAGGGCA AGCACTTAGA
TCACGTGCTC GTAGCCGCCG CAGTATTACT TTGGAAGTTG CCGAGGATGC TGAAAAAGTG
CCTTCAAGTG AAGATGCTGC ACTTGAGAAA GCTGAACGTA GTTCTTTAAA GGATTCTCTC
GAAGATCCGA ATATAAAATC GACATCTTTG AACAATGAGG GATCGTCAAA TGCTCCTGTT
GTGACTAGTG GAGCGCAGAC TGATACAAAT AGGGAACAGG GCATCTATAG TCTGGCTGGT
GCTCCTGGGG TTAGACCTGG AGAGGAAAGT ATACCTAATC CTATCTACGA AGGTGCTCCT
CCTGGTGGAG AACACATTCA TGCTGGAATA AATGATGTAC GTGGCCAGAC TCCTTACAGC
TTGGCTGGTG CTCCTGAGGT TAGACCTGGA GAGGAAAGTA TACCTAATCC TATCTACGAA
GGTGCTCCTC CTGGTGGAGA GCACGTTCAT GCTGAGATGG GTAAGCAAAA TACTCATACT
TTGCTAGGTC CTTCTGGAGC AGAAATAATT AGAGAAGATG GTTCACAAAT CTCTCCAGCA
GTAGAGAGTA CAGACTCTAA TGAAGAGACT GCCGAACCGG ATAATGGAAT TCGTACCCAG
AGTCAGGCAG GTGATGATGA AAAAGATTAG
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| Protein sequence | MRRVVLGLLL LLSACDMGCI YPGDGVSANF TNVIVPAYLE GMDPSKPSTL WVDSGIKIRE
GEEVPFGVIG DIDLCGKLFN RKEFEICSEW NCQVIEVGNR FCANGAPAGI HNPSDLSDAK
NKEPLCEKAS TTHERYYVDT YLEVSPGEKV LFELIPVVSV NLVDCDNIPL GFSWYNNEDL
KDVKGKKMQL VSGGEVDPVA ICKAGGEVHL QRGGNKLQVF LPPSLKGELL NSALVGNGYT
PRSNRVIVGN GEGKWIEAAA VDMRVIVPHI FSDEKFCDAG FKSQVDHEEI RKGKKISWEY
KYKDSCDSKK DEGKLKRFET YKVNKMCGNF ISDSTYKDGI YSIRYDEDFD SLNPCFRARR
RNKSDLERAW ADLLVAKIGR AGKDKSTLLL SDDEAQLCIY NIGTEETNLY GNRVKRCVDV
GEYGGSVPSL ELNTWFTIPR SISGGSPLLL GIAGNEDSSK NSVYSGYRVR VRKSCSYQNG
EKLYVYIGDG PPSIAPGVSH PNVHELRFNA DTPKRAVVNP LNIDSSTYSL SFNGSGKVYF
GIAGAADSSL VKAVKTGKYL PSEDNKYTVS IVQERWYPNF SGPFNTIYHA IVKLFYGKGQ
KNPYGKPEAT GVIVQIYNAI VGKIAPAVQA LIVLYLVTYG LSFLLGIIRD PRSDVVMRVM
KVAFILLLVS DYSWKFFGET IFDLFVNSSN ELIYYFTGNL SGKYSPDSTF EFLDRTVGVI
ITNQFWLRML ALFLSGPAGW FIMSIILWGV FLFFSCIIEA MVIYLMILIA TGLLFLLAPI
FITFLIFQRT KPLFEGWLKM LISFALRPIF IFGTLALLNA VMMATLYGVN NFGVCPGCVV
STDIFGSDLC IISSLIPMGF DPGMASMDRF LIPGSTNSGF MGLPVSLVSV IVFLLVAHAM
KSFLKITDSM VDMITGTMMG YTGVTGGGSP SDAGHAAYQA MLSVVGLDDA TQSEIGQALR
SRARSRRSIT LEVAEDAEKV PSSEDAALEK AERSSLKDSL EDPNIKSTSL NNEGSSNAPV
VTSGAQTDTN REQGIYSLAG APGVRPGEES IPNPIYEGAP PGGEHIHAGI NDVRGQTPYS
LAGAPEVRPG EESIPNPIYE GAPPGGEHVH AEMGKQNTHT LLGPSGAEII REDGSQISPA
VESTDSNEET AEPDNGIRTQ SQAGDDEKD
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