| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_2162 |
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| Symbol | |
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| ID | 3918827 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Novosphingobium aromaticivorans DSM 12444 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007794 |
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| Strand | + |
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| Start bp | 2300247 |
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| End bp | 2302790 |
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| Gene Length | 2544 bp |
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| Protein Length | 847 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640444917 |
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| Product | ATPase |
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| Protein accession | YP_497435 |
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| Protein GI | 87200178 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family
[TIGR02746] type-IV secretion system protein TraC |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.532567 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCGAAC AACTCAAGAC CGTCGTCGAT CGGCTGCTCA GCGGATTGCT GGGTGATGCC
GAGCACGCCG ACAAAGCCCG CCCGCAGCTC ATGGTCGACA TGCTCTCCGA CTGGCTCCCC
TACCGGGTCT ACGATCCGGC AACCCGCCTG TACTTCAACG CACGCTCGAA GGGCTTTGTC
CTTTCGGTTA CGCCGCTGAT CGGAGCCGAC GAGCGTACCG GGGAAATCCT GGGACAGTTC
TTCTCGGAAG GACTGCCAGC AGGCGCCTGC CTTCAGGTAC TCCACCTTGC AAGCCCGCGC
ATCAGCAGGA TCATCGCCCC GTGGTTCGCC CCACGATACA TCCAGGGCGG CGTGTACGAG
GCAATTGCCC GGCACCGGGC GCGGCGGCTC TATTCGCTCG TATGGGAGTC CGGCTCGCCG
GACGCGCCCT TCCATGCGCG GCATCACCAG GTGATCGTCT CGGTCGGGGT GCCGACCTCC
AAGTCGGTCA GCAATGAGGA TCTCAAGCAG ACCCGCGATG GCCTGGTGGC GATGCTCAAG
TCGCTCAATC TCGGCGTGGT CGAAGTCGGG CCGGAAGCGC TCATCGCTGT CATCGATGAT
CTGACTTCGC CCACCACCGC CCCGCAGGAC GATGCGGTGC CCTACAACCC GAATGATCCA
ATCGCATCCC AGGCGATCCG CCACGACATC GAACTGGTGG TGGCTGAAGA CCGCATGCGG
CTCGTCACCG AGCGTTTCCG TCCCACTGGC AAGGTCAATG ACGGCGTGCC CGAGATCGGG
ACCGTCTATC CCGATGCCTT CGATGTCCGG CATTTTGCCG TACGCAACAT GCCATCGCGC
TGGGCCCCGT GGGAATGCGC GCGGCTGATC GGCGACCTGT TCACCGACAA GCTGCGCTTC
CCCTGCCCCG CCGCCACCAT GCTGTGTCTC GTCTATCCGG ACCAGGAGGC TGCATCGGCG
AAGGCCGGAT TCAAGTTCAT GCGGACGACC AGCCTCGCCG GGACCCGCAG CGCCCGGTTC
CTGCCTCGGA TCGGCGAACA GGCCGCCGAG TGGCAGCATG TGCAGGCCGA GCTTCAGGAA
GGCCGTCGGC TCGTGCGGGT CTTCTACGGC GTGACGGCCT ATTCGCCGCT AGGCCAGGGC
GACCGCCATG AACGGGCGAT CAAATCGATC TACAAGGCGG CGGGCTGGGA CCTTACCGAC
GAGCGCTATC TCCAGATCCA GGGTTTGCTC GCCGCGATGC CGCTCACCCT GGCTGACGGA
CTCGGCGCCG ACATGGAGCG GCTGAAGCGG TTCAAGACTG TGTTGTCGAC GACCGCCGCC
AATATCGCGC CCATGCAGGG CGAGTATCTC GGCAGCGCCC ACCCCCACCT GCTGTTCATC
GGGCGGCGCG GCCAGCCCTT CTTCTGGTCC CCGTTCGAGA ACGAGGCCGG CAACCACAAT
GTCGCGATCT GCGGCAAGTC GGGATCGGGC AAGTCGGTGC TGCTCCAGGA GATGTGCGCC
GCGCTGCGCG GTGCCGGCGC ACAGGTGGTC GTGATCGACG ATGGCCGCAG CTTCGAGCAC
TCGGTCAAGC TGCAGGGCGG CCGCTTTGTC GAGTTCACGA TTGCAGCGGG CTTCTGTCTC
AACCCGTTCT CGATGATCGA TGCGACCCGT GCCACCGAAG ACGAGGACTA CCGCCTCGAC
TGCTTCGGGA TGATCAAGGC CATCGTCGGG CAGATGGCTC GCCACAGCGC GAAGCTGACC
GATACTGAGC GCGGATTGAT CGACCGGGCG GTCAACCTTG TCTGGGCGCA GCACGGCACG
GCAGCCACAG TTACGACCGT CGGCGAGATG CTGGCCAGTC TCGGCCATGA CACTGCCGCT
GACATAGCAA CCGCGCTCGC CCCCTACATG GCGGGCGGAA CCTACGGCGC CTTCTTCGAA
GGCCAGGCAA GCCTCGACCT CGATGCGGAC TTCACGGTCT TCGAGATGTC CGACCTTGCG
AGCCGGGAGG ATCTGCGCAG CGTCGTCCTC TCAGCCATCA TGTTCATGAC CAGCCAAGCC
ATGACGCGAA GCCCAAGGTC GCTGCGCAAG CTTCTGCTGA TCGATGAAGC CTGGTCGATG
CTCAAGGGCG GTTCGATGGG TGAATTCGTC GAAACCTACG CCCGCACCTG CCGCAAGTAT
GGCGGCGCGC TGGCGACCGC TACCCAGTCG CTCAACGACT ACTACAAGTC CGACGGGGCA
ACGGCGGCGC TCGAGAACAG CGACTGGATG CTGATCCTCC AGCAGAAGCC GGAGACGATC
GCCGATTTCA AGGCGAGCAA GCGCCTCGAT ATGGACGATC GCACCGAGAC GCTGATCCGC
AGTCTCAAGC GCTCCGGGAG CGACTATTCC GAGGTGTTCA TCAAGGGGCC GGAGACCGAG
GCGATCGGGC GGCTCGTGCT CGATGACTAT TCGGCAACGC TCTTCTCGAG TTCGCCCCAA
ACCTTCGCCG CCATCGATGC CGAGATCGCG CGCGGGCACC AGCTCGCCGA TGCCATCGAG
CGCATCGCTC ATCCCAACCG CTGA
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| Protein sequence | MAEQLKTVVD RLLSGLLGDA EHADKARPQL MVDMLSDWLP YRVYDPATRL YFNARSKGFV
LSVTPLIGAD ERTGEILGQF FSEGLPAGAC LQVLHLASPR ISRIIAPWFA PRYIQGGVYE
AIARHRARRL YSLVWESGSP DAPFHARHHQ VIVSVGVPTS KSVSNEDLKQ TRDGLVAMLK
SLNLGVVEVG PEALIAVIDD LTSPTTAPQD DAVPYNPNDP IASQAIRHDI ELVVAEDRMR
LVTERFRPTG KVNDGVPEIG TVYPDAFDVR HFAVRNMPSR WAPWECARLI GDLFTDKLRF
PCPAATMLCL VYPDQEAASA KAGFKFMRTT SLAGTRSARF LPRIGEQAAE WQHVQAELQE
GRRLVRVFYG VTAYSPLGQG DRHERAIKSI YKAAGWDLTD ERYLQIQGLL AAMPLTLADG
LGADMERLKR FKTVLSTTAA NIAPMQGEYL GSAHPHLLFI GRRGQPFFWS PFENEAGNHN
VAICGKSGSG KSVLLQEMCA ALRGAGAQVV VIDDGRSFEH SVKLQGGRFV EFTIAAGFCL
NPFSMIDATR ATEDEDYRLD CFGMIKAIVG QMARHSAKLT DTERGLIDRA VNLVWAQHGT
AATVTTVGEM LASLGHDTAA DIATALAPYM AGGTYGAFFE GQASLDLDAD FTVFEMSDLA
SREDLRSVVL SAIMFMTSQA MTRSPRSLRK LLLIDEAWSM LKGGSMGEFV ETYARTCRKY
GGALATATQS LNDYYKSDGA TAALENSDWM LILQQKPETI ADFKASKRLD MDDRTETLIR
SLKRSGSDYS EVFIKGPETE AIGRLVLDDY SATLFSSSPQ TFAAIDAEIA RGHQLADAIE
RIAHPNR
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