| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_1619 |
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| Symbol | |
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| ID | 3918727 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Novosphingobium aromaticivorans DSM 12444 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007794 |
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| Strand | + |
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| Start bp | 1688627 |
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| End bp | 1692235 |
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| Gene Length | 3609 bp |
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| Protein Length | 1202 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640444359 |
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| Product | cadherin |
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| Protein accession | YP_496893 |
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| Protein GI | 87199636 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG2931] RTX toxins and related Ca2+-binding proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.42147 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCTACA TTCAGATCGA TGGTTCGCTG TCGGACTGGT CCTCGAACCT GAGGATCGAC
GCGGGCGCCG TGGACGGCTA CCAGATCTAT GCCACGACCG ATGCGACCGA CTATATCTTC
GCTTTCGCAG CGCCCACGGC GGTTGGTGCG AACACGACGA TCTGGCTCAA CACGGATCTC
AACCAGGCGA CCGGCTACCA GCTCTGGGGG ACTGTTGGCG CCGAGTTCAA CGTCAACTTC
AAGTCCGACG GCTCTGCAGC ACTTTATTCG GGGGCAGCCG GCGGAACGCT TGTCGCGGAC
AACCTCGTCC TTGCCTACAA CGCCGATAAA ACAATGGTCG AGCTGCGCGT TCCGAAGGAT
CTGCTTGGCA ACCCCGGTTC GATCGACACC GTGTACGACA TAAACGACAC GGCGATCATT
CCCAGCTTCT ACCAGGACAA CGCCATCCGG GTCTGGGACG ATTCCGAGCT GGCCAGCGTC
ATCCCGGCGA CAGATACCCG TATTGCGATC GTCTATTCAG CGACGACGGC GGCCAACTAC
TTCAGCCAGA CTGCCTATTC GGACCTGTTC ATGGCCGCCC AGTCGCAGGC GGCGCAGGCT
GGCGTGCCCT TCGACATCAT CACCGAGGCC GACCTTACCG ACATCAACAA GCTCGCCCAG
TACAAGGCGA TCGTCTTCCC CTCGTTCCGC AACGTGCAGG CAAGCCAGGC CGACGAGATC
GCGCACACCC TTCAGCTCGC ATCGCAGGAG TTCCACGTCG GCTTCATCGT GTCCGGCGAG
TTCATGACCA ATGACGAGAA CGGGAATGCC ATGGCCGGCA ATTCCTATTC CCGCATGGCG
ACGCTGCTTG ACGCCACGCG CGTTACGGGT GGCACCGCTA CGTCACTGAC GGTCACGGCC
ACCGACCCGA CCGGCGTCGT CCTTGATGGC TATGCCAACG GGGAACTGGT CAATCAGTAT
GCCAACGTCG GCTGGAACGC TTTCCAGAGC GTGAGCGGCA CCGGCCAGAC CATCGCCACC
GAAACCATAA ATGGTTCGTC GACATACGCT GCGGTTCTCG CCACCCAGAC TGGTGGTCGC
AACGTCCTCT TCTCGAGCGA TGCGGTGATG GCCGACGCCA ACATGCTGCA ACGCGCCATC
GATTATGCCG TGAGCGGCGA GACGGTGACC GTTTCGCTGA ACATGACCCG CGACGCCGGC
CTTGTCGCCG CGCGCGTGGA CATGGACCAG AGCATGTACA TCGAGGACGT CAACGGCGGC
ATCTATGACC AGCTCGTTCC GCTGCTTCAG CAATGGAAGG CGCAATACAA CTTCGTCGGC
TCGTTCTACG TCAACATCGG CGACAACACC CAGCAGGGGA TCTATACCGA CTGGAACAAG
TCGCTGCCGT ACTACACGGC GATGATCGGC CTCGGAAACG AGATCGGCAC GCACACCTAT
ACCCACCCCG AAGACACCAA CCTGCTGAGC CCGTCTCAGT TGCAGTTCGA ATTCGAGCTG
AGCACCCAGA TCCTCGAGCA GAAGCTCAGC GCGGCGCTGG GTTATGCCTA TACCATCGAA
GGTGCCGCGA TCCCCGGCGC GCCGGAAACG CTGACGACTT CGCTGGCCAT CGAACAATAC
GTCAAGACCT ATCTGACTGG CGGCTACACT GGTCAAGGCG CGGGCTATCC CAACGCCTTC
GGCTATCTGA CGCCCGGTAG CCAGGACAAG GTCTATATCG CGCCGAACAC CTTTTTCGAT
TTCACCCTGT TCGACTGGCT GCACCTTTCG GCGGCGGATG CCAGCGCGTT GTGGCAGTCT
CAGTACGAGA AGATCGTCAG CCAGGCCGAC TCTCCCGTCG TCGTCTGGCC ATGGCACGAT
TACGGTGCGA CGGCGTTCAA TTCGCCCAAC TACGCGCCCG AAATCTTCAA CACGTTCCTT
GCCCAGGCCG CAGCCGACGG CATGGAATTC GTGACCCTCG CCGACCTGGC CAATCGCATC
AACGCCTTCC ATGGCGCCAA GGTGACGACT TCGGTCTCAG GCAACACGAT CACCGCCAAT
GTCACCGCTT CCGGCAACGT CGGTACGTTT GCTTTCGATC TGCAGGGGCA GGGCAGCCAG
GTCATTTCGA GCGTGGCCGG TTGGTATGCA TACGACAGCG ACAGCGTGTT CCTGCCCCAG
AATGGCGGCA CGTTCGTCAT CACCCTGGGC GCGGCGCAGA CGGATGTGAC TCACATCATC
GATCTGCCCA TGCGGGCGAC GCTGATGTCG GTGACGGGGA ATGGCACGAA CCTGTCGTTT
CAGATCCAGG GCGAAGGCAC GGTTGTCATC GATCTTTCCG ATCCGACCAA CAAGAGCGTC
CAGGTGTCTG GCGCCACCAT CGTTTCCCAG GTCGGAGACA AGCTTACCAT CGATATCGGG
CCGGTCGGGT CGCACACCGT TACCGTCACC CAGACTTCGC TCAACCACGC GCCGGTTATC
GAGTCCAATG GCGGTGGAGA CACCGCGGCG ATTTCGCTGG CGGAGAACCT CCTCGCAGTG
ACTGCGGTCA TCGCGACCGA CGCTGATGCC AATGCCCTGA CCTACTCGAT CACGGGAGGG
GCGGACGCAT CGAAGTTCAC GATCAATGCG ACGACGGGTG CGCTTGCGTT TCTGGCCGCG
CCGAACTTCG AAGTCCCGAC CGATGTCGGC GGCAACAACG TATACGATGT CGTGGTGACT
GCATCCGACG GAGCGCTCAC CGATAGCCAG GCGCTGGCCG TGACGGTCAC AAACGTCAAC
GAGGCGCCGG TAATCACGTC GAATGGCGGC GGTGCGACCG CCTCTATCTC GCTTGCCGAG
AACAACGCGG CGGTCACCGT GGTGACCTCG ACCGATCCGG AAAACACCGC GCGGACGTAT
TCGCTCTCGG GTACGGACGC TGCTCGCTTC ACGATCGACG CCGCGACCGG CGCGCTCAGT
TTCGTCAACG CGCCAGATTT CGAAAACCCC ACGGATGTGG GGGCCAACAA CGTCTACAAC
GTGGTCGTGA CCGCTTCCGA CGGCAGCCTG ACGGATACCC AGGCACTGGC AATCACCGTC
ACGAACAAGA AGGGCGTAAC CCTCAATGCT TCGTCGAGCA CCGGCAGCGT TCTGAACGGG
ACGGGCGAGG AAGACCAGCT CAATGGCTGG AAGGGTGCCG ATACCCTCTA CGGTCTCGGC
GGTAACGACC GTCTCGACGG TGCGGGCGGA AACGACCGCC TTTATGGCGG TGATGGCAAG
GACGTTCTGA TCGGCGGCGC CGGTACGGAT ATCATGTCTG GCGGGGCTGG TGCGGACCGC
TTCGAGTTCA ACGCGCTGGG GAACAGCGTG ACGGGTGCAT TGCACGACGT CATCACCGAC
TTCGAAGCGG GCATCGACTT GATCGATGTG TCGAGCATCG ACGCGAATTC CGGCAAAGGC
GGGAACCAGA CCTTTGTCCT GCTAGCGGAA GGTGCGGCGT TCACGGGGGT CGGGCAACTT
CGTTACTTCT ACGACAGTGC GACCGACCAG ACGATTGTCC AAGGTAACGT GAACAACAAT
CTGGCAGCCG ATTTCGAAAT CGCATTGTCC GGACATCAAA CCCTGTCCGC AAGCATGTTC
ATCCTCTGA
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| Protein sequence | MTYIQIDGSL SDWSSNLRID AGAVDGYQIY ATTDATDYIF AFAAPTAVGA NTTIWLNTDL
NQATGYQLWG TVGAEFNVNF KSDGSAALYS GAAGGTLVAD NLVLAYNADK TMVELRVPKD
LLGNPGSIDT VYDINDTAII PSFYQDNAIR VWDDSELASV IPATDTRIAI VYSATTAANY
FSQTAYSDLF MAAQSQAAQA GVPFDIITEA DLTDINKLAQ YKAIVFPSFR NVQASQADEI
AHTLQLASQE FHVGFIVSGE FMTNDENGNA MAGNSYSRMA TLLDATRVTG GTATSLTVTA
TDPTGVVLDG YANGELVNQY ANVGWNAFQS VSGTGQTIAT ETINGSSTYA AVLATQTGGR
NVLFSSDAVM ADANMLQRAI DYAVSGETVT VSLNMTRDAG LVAARVDMDQ SMYIEDVNGG
IYDQLVPLLQ QWKAQYNFVG SFYVNIGDNT QQGIYTDWNK SLPYYTAMIG LGNEIGTHTY
THPEDTNLLS PSQLQFEFEL STQILEQKLS AALGYAYTIE GAAIPGAPET LTTSLAIEQY
VKTYLTGGYT GQGAGYPNAF GYLTPGSQDK VYIAPNTFFD FTLFDWLHLS AADASALWQS
QYEKIVSQAD SPVVVWPWHD YGATAFNSPN YAPEIFNTFL AQAAADGMEF VTLADLANRI
NAFHGAKVTT SVSGNTITAN VTASGNVGTF AFDLQGQGSQ VISSVAGWYA YDSDSVFLPQ
NGGTFVITLG AAQTDVTHII DLPMRATLMS VTGNGTNLSF QIQGEGTVVI DLSDPTNKSV
QVSGATIVSQ VGDKLTIDIG PVGSHTVTVT QTSLNHAPVI ESNGGGDTAA ISLAENLLAV
TAVIATDADA NALTYSITGG ADASKFTINA TTGALAFLAA PNFEVPTDVG GNNVYDVVVT
ASDGALTDSQ ALAVTVTNVN EAPVITSNGG GATASISLAE NNAAVTVVTS TDPENTARTY
SLSGTDAARF TIDAATGALS FVNAPDFENP TDVGANNVYN VVVTASDGSL TDTQALAITV
TNKKGVTLNA SSSTGSVLNG TGEEDQLNGW KGADTLYGLG GNDRLDGAGG NDRLYGGDGK
DVLIGGAGTD IMSGGAGADR FEFNALGNSV TGALHDVITD FEAGIDLIDV SSIDANSGKG
GNQTFVLLAE GAAFTGVGQL RYFYDSATDQ TIVQGNVNNN LAADFEIALS GHQTLSASMF
IL
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