Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPB_4027 |
Symbol | |
ID | 3911834 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris HaA2 |
Kingdom | Bacteria |
Replicon accession | NC_007778 |
Strand | - |
Start bp | 4596683 |
End bp | 4597882 |
Gene Length | 1200 bp |
Protein Length | 399 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637885931 |
Product | secretion protein HlyD |
Protein accession | YP_487631 |
Protein GI | 86751135 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.278871 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.718772 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGGGGAT CCATCAGGTT TGCCTTGACG GCGGTGACGC TTGCGTGTCT CGCGCCGGGG TTGGCCGGCT GTAACGACCC GAAGACAGCG AATGCGGCGA CGCCCGAGAA GCCGGAAGTC GGCATCATCA CGGTGAAGCC TCACGCCCGT GCGATCGTTC GCGAACTGCC CGGCCGCATC GCGCCGATCC GCGTCGCCGA CGTGCGGCCC AGGGTCTCCG GCATCGTGGT CCACCGCCCG TTCAAGCAGG GCAGCGAGGT CAAGGCGGGC GATCCGCTCT ACGTCATCGA CCCGCGGCCG TTCGAGGTCG AATTGAAGGC CGCCGAGGCC GCGCTCGCCA AGGCGCATGC GGCGCGCGAG CAAGCGTTGC AGCAGGCCAA TCGTGTGGCG ATGCTGACCA GGGAGCAGGC CGCCTCCAAG GCGCAGAACG AAGTCGCGGC CAGTAATTCG CGGCAGGCCG ATGCGGAGGT CTCCGCCCGG GAGGCCGAAG TCTCGCGCGC CAAGCTGAAC CTCGAATATG CCACCGTCCG GGCGCCGATC AGCGGCAGGA TCGGCGCTGC GCTGGTGAGC GAGGGCGCTC TGGTGGTCCA GAACGACTCC AACAGCCTCG CCACGATTCA GCAGCTCGAT CACGTCTATG CCGACTTCAC CCAACCGGTC GCCGAAATGG TCCGGCTGCG TCGCGCTTTC GAATCCGGCG AACTCGACCA GATCGCGCCG GACGCGGCGC GCGCCCGGCT GGTGCTGGAC GACGGCACGG TCTACCCGTT GCCCGGCAAG CTGCTGTTCT CGGAGTCGAA GGTCGACGCC TATACCGGCC AGGTGACGCT GCGCGCCGAA TTCGACAATC CGAACCGCGA ATTGCTGCCC GGCATGTATG TCCGCGTGCG GATCGAGCAG GGCTTCGACG CCGACGCGAT CTCGGTGCCG GAGGAGGCGG TCCAGCGCAA CGGAGGCGGC GGCAGCGAGG TCTTCGTGGT CAAGGACGAC AATCGCGTGG CGGTGCAGCC GGTCCGCGTC GGCTCGCAGC AGGACGGCCA GTGGCTGGTG CTCGACGGCC TCAAGCCGGG CGCGCGCGTC GTGGTCGAGG GCTTCCAGAA ATTCGCGGCT GGAGACGCCG TCGTTCCGGT GAGCCTCGAG GAAACCAAGT CCGCGACCGC AGCCCCTCCG ACGACGGGCA GCACGCAGAA GCTGCAGTAA
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Protein sequence | MRGSIRFALT AVTLACLAPG LAGCNDPKTA NAATPEKPEV GIITVKPHAR AIVRELPGRI APIRVADVRP RVSGIVVHRP FKQGSEVKAG DPLYVIDPRP FEVELKAAEA ALAKAHAARE QALQQANRVA MLTREQAASK AQNEVAASNS RQADAEVSAR EAEVSRAKLN LEYATVRAPI SGRIGAALVS EGALVVQNDS NSLATIQQLD HVYADFTQPV AEMVRLRRAF ESGELDQIAP DAARARLVLD DGTVYPLPGK LLFSESKVDA YTGQVTLRAE FDNPNRELLP GMYVRVRIEQ GFDADAISVP EEAVQRNGGG GSEVFVVKDD NRVAVQPVRV GSQQDGQWLV LDGLKPGARV VVEGFQKFAA GDAVVPVSLE ETKSATAAPP TTGSTQKLQ
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