| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1266 |
|---|
| Symbol | |
|---|
| ID | 3909200 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 1449066 |
|---|
| End bp | 1451120 |
|---|
| Gene Length | 2055 bp |
|---|
| Protein Length | 684 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637883160 |
|---|
| Product | Outer membrane autotransporter |
|---|
| Protein accession | YP_484887 |
|---|
| Protein GI | 86748391 |
|---|
| COG category | [N] Cell motility |
|---|
| COG ID | [COG5571] Autotransporter protein or domain, integral membrane beta-barrel involved in protein secretion |
|---|
| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.384296 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAGTA TCTCAAGGGG TCATGCGCGG AATTGCGCGC CGATATTCGT TTCCCGCATT
CGCACTGGAC TCCTGACGAG CGCTGTCGTG ACGACGGTCT TGGGCGCATC GCTGGCGCCC
GCACAGGCGC AGTTCGCGAG GCTGTATGGC TTCGGCGACA GCTATGCCGA TACCGGCGCC
GCACCCGGCG GCGCGTACCG GCTGATCGGC GCGAACGGGA CCGGCACGGT CACGATCCCA
TACTTTCCGT TCACGCTGAC CCCATCCGAC TTCTGGCCTT GTCCAAGCCC GACCTATACG
AGCTGCCGCT TCACCGGCAG CACCAATTTC GTCGATTCGC TGCAATCGAT CTATGGGCTG
TCGGGCCTGA CGAACTACTC GATCGGCGGC GCGCGCACCG GCAACACCAA CACCATGCCG
TTTCTGTCGA GCGGCTACGG GCTGCCGTAT GAATTGCAGC AATTCGCCGC CAGCGGGACG
CGCTTCACCG AACGCGACCT GATCGCGCTG TCGATCGGTG GCAACGATCT GTCCGGCATC
AATGTCGGCA CCGGCGATGT CGCCTCGCAG AATGCGATCA TCGTCGCGGG CGCGCTGCAG
TCGGCCGCCG CCGCGGTGGG CGGCGTGCAG CAATTGGTGG CGGCCGGCGC GCGCAACATC
GCCTGGCTCG GCACCGGTAG CTCGAAGTGG TTTCCGGAGG CGACGCTCGG CTCGCAGGGA
GGGGCCATCG GGACCTTCAA CTTCAGCGCG TCGCAGCGCG ACGCCTGGGC CGACACCTAT
TACCAGCAGA CGCAGCTGAT GCTGGCGCCG ATGGCGCAGG CCGGCGTGCG CATCTTCCTG
TTCAATTTCG GCATCCTGCA GCAGCGCGTC GCCGAGAACC CGGCGATGTA CGGCTTCGCC
GGCGTGCCGG CGGGCTTCAC CGGCTGCGAG GCCGGACCGG GCACCGGCGC GACGCCGGGG
ACGGTCGCGG TGAATGTCGC CGGCTGTTTC TATGAAAACT CGGTGCATCC GACCGGCGCG
GCGATGGCGC TGATCGCCAA CTACATGGCC AACCAGATCG ACGCGCCGAC CACGGTGACG
CCGCAGGCCG CCATCGCGAC CGGCCTGCTC GGCAGTTTCT CGAATTCGGT GTTCGATCGC
CTCGAGGCCG GCCGGCGCTT CCAGCCGTCC GGTGTCAATG CCGCAATGGC GGCGATGCCG
AGCAAGGCCG TTGCGCTGAC CGAGCCGGCG GACCGTTGGT CGGTCTATGG TGCGGCGAGC
TATGCGGGCG GCAGCCGTGA CCGGCAGTTC TACGCCACCG GCTATGACTA CGATGCGGCG
GGCGGCTATC TCGGGCTGGA ATATCGGCTC AATGCCAATT GGCGCGTCGG CGGCGTGTTC
GGCTATTCGC AGCCCGACGT GAAGCTCGCG GTGCAGGATG CGCGCAACCG CATCGATGCG
TTTCAGTTCG CCGGCTACAG CTCCTACACC GATGCGCACT GGTTCGCCGA CGGCCTGGTC
GCCTATGGCC GCCAGGACTT CACGCTGGAG CGTCGCGGCA TCATCGACAT CATCCGCGCC
AGCACCAGCG CCGACGTGGT CACGGTCGCC GCGCGTGGGG GCTATCTGTT CGATGCCGGC
CGGCTCCGCG TCGGGCCGAT CGCCGGGCTG AACTACACCA ACGCCACGAT CCGGGGCTAC
ACCGAAACCG GCGACGTGCT GCTCACCATG ATGGTGGATC GCCAGACCCT CGACACCCTC
ACCGGCGATG CCGGCGTGCA GCTCCGCTAT CCGCTGCAAT TCGGCAACGG CCTCTACGCG
CCGTTCCTGA ACCTCACCGC CGCGCACGAC TTCCTGCGCT CCGGCCACAC TGTCACCACC
ACGCTGGTGT CGGCGCCGCT GCTGCCGATC CTGACGCCGG TGTCCGCCGA TGGCGGCACC
TATGGCCGGG TTGCGGCCGG CGTCTCGGCC CTGGTCGCCA CCAACGTCAC CGCGACGCTG
ACCGGCACCA CCAGCTTCGC CCGCAAGGGC GGCGACGACG CCGGCGTCAC CGGCGGCGTC
AAGCTCGCGT TCTGA
|
|---|
| Protein sequence | MSSISRGHAR NCAPIFVSRI RTGLLTSAVV TTVLGASLAP AQAQFARLYG FGDSYADTGA
APGGAYRLIG ANGTGTVTIP YFPFTLTPSD FWPCPSPTYT SCRFTGSTNF VDSLQSIYGL
SGLTNYSIGG ARTGNTNTMP FLSSGYGLPY ELQQFAASGT RFTERDLIAL SIGGNDLSGI
NVGTGDVASQ NAIIVAGALQ SAAAAVGGVQ QLVAAGARNI AWLGTGSSKW FPEATLGSQG
GAIGTFNFSA SQRDAWADTY YQQTQLMLAP MAQAGVRIFL FNFGILQQRV AENPAMYGFA
GVPAGFTGCE AGPGTGATPG TVAVNVAGCF YENSVHPTGA AMALIANYMA NQIDAPTTVT
PQAAIATGLL GSFSNSVFDR LEAGRRFQPS GVNAAMAAMP SKAVALTEPA DRWSVYGAAS
YAGGSRDRQF YATGYDYDAA GGYLGLEYRL NANWRVGGVF GYSQPDVKLA VQDARNRIDA
FQFAGYSSYT DAHWFADGLV AYGRQDFTLE RRGIIDIIRA STSADVVTVA ARGGYLFDAG
RLRVGPIAGL NYTNATIRGY TETGDVLLTM MVDRQTLDTL TGDAGVQLRY PLQFGNGLYA
PFLNLTAAHD FLRSGHTVTT TLVSAPLLPI LTPVSADGGT YGRVAAGVSA LVATNVTATL
TGTTSFARKG GDDAGVTGGV KLAF
|
|---|
| |