| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_2287 |
|---|
| Symbol | |
|---|
| ID | 3904821 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 2667079 |
|---|
| End bp | 2668008 |
|---|
| Gene Length | 930 bp |
|---|
| Protein Length | 309 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637879618 |
|---|
| Product | amidohydrolase 2 |
|---|
| Protein accession | YP_481384 |
|---|
| Protein GI | 86740984 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2159] Predicted metal-dependent hydrolase of the TIM-barrel fold |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0025243 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.0000165 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGTACGCCA AGGACGGTGA GAACTACTTC ATCGTGGACG CCCACATCGC GTTGTGGGAC
GGGCGCCCGG AGAACCAGCG CAACGTCCAC GGCAAGCAGT TCATCGACTG CTTCTACTAC
CAGGGCGGCG AGCGGCTGAT GAAGGATGTG TTCGAGACCG GGTACGTCGA CCACGCCATC
TTCCAACCCG CCTACCTCGG GGAGTTCTAC ACCAACGGGT TCGGGCAGAC CGAAGAGGCG
TTCGCGCTCA CCCAGGCCCA CCCCGACAAG CTGACCTACA ACCACAACTG GGATCCGCGC
AACGGCGAGG CCGGCCTCGA CCAGCTCCGC GCCGACGCCG AGAGGTTCGG TCTCAAGGGG
GTCAAGCTCT ACACCGCGGA GTGGAAAGGC GGCTCGCGCG GATGGAAGCT GACCGATCCC
TGGGCTTATC GGTACCTGGA GGCCTGCCAG GAGTTAGGCA TCAAGAACAT CCACGTCCAC
AAGGGACCGA CCATCAAGCC GCTGGACCGC GACGCGTTCG ACGTCGCCGA CATCGACCAC
GTCGCAAGCG ATTTCGAAGA CCTGAACTTC ATTGTGGAGC ACGTGGGGAT GCCCCGGCTG
GAGGACTTCT GCTGGATCGC GACCCAGGAG ACCAACGTAT ACGGCGGACT CGCGGTGGTC
ATGCACTTCA TGTACTCGAA GCCGCGCTAC TTCGCCCAGG TCATGGGCGA ACTTCTCTAC
TGGATCGGCG AGGACAAGAT CCAGTTCTCC TCCGACTACG CGATCTGGAC GCCCAAGTGG
CTCATCGAGA GTTTCGTCGA CTGGCAGTTC CCCGAGGACA TGGGGTACGC ACCCATCACC
ACGGAGCAGA AGAAGAAGAT CCTCGGGCTC AACGCCGCCA AGATGTACGA CCTCCCGGTG
CCGGCCGAGC TGCGGCTGGC AGGCGCGTGA
|
|---|
| Protein sequence | MYAKDGENYF IVDAHIALWD GRPENQRNVH GKQFIDCFYY QGGERLMKDV FETGYVDHAI
FQPAYLGEFY TNGFGQTEEA FALTQAHPDK LTYNHNWDPR NGEAGLDQLR ADAERFGLKG
VKLYTAEWKG GSRGWKLTDP WAYRYLEACQ ELGIKNIHVH KGPTIKPLDR DAFDVADIDH
VASDFEDLNF IVEHVGMPRL EDFCWIATQE TNVYGGLAVV MHFMYSKPRY FAQVMGELLY
WIGEDKIQFS SDYAIWTPKW LIESFVDWQF PEDMGYAPIT TEQKKKILGL NAAKMYDLPV
PAELRLAGA
|
|---|
| |