Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Francci3_1888 |
Symbol | |
ID | 3906837 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. CcI3 |
Kingdom | Bacteria |
Replicon accession | NC_007777 |
Strand | - |
Start bp | 2219726 |
End bp | 2221009 |
Gene Length | 1284 bp |
Protein Length | 427 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 637879226 |
Product | hydroxyglutarate oxidase |
Protein accession | YP_480993 |
Protein GI | 86740593 |
COG category | [R] General function prediction only |
COG ID | [COG0579] Predicted dehydrogenase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.452346 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGTAGGTC GCATCGCGGT GATCGGCGGT GGAATTCTCG GGCTGGCGGT CGCCCGTCGG CTCGGGCAGG TCGAACCGGG ATCGGCCGTG ACGGTGTTCG AGAAGGAACA GGACATCGCC CGGCATCAGA CCGGCCGCAA CAGCGGCGTC GTCCACGCCG GTCTCTACTA CGTCCCAGGT TCGCTCAAAG CGATCCTGTG CCGCCGTGGG GTCGGGCTGC TGCGGGAGTT CTGCGCCACG CACCGTATCC GGTACGACGA GTGCGGCAAG ATCGTGGTCG CCGTCGACAA CAGCGAGCTC GAACGGTTGG CCGAGATCGA GAAGCGGGCG ACGGCGAACG GCGTACCGCG GACCCGGATG CTCGACGCCG ACGAGCTGCG GTCCGTCGAA CCCCACGCCC GCGGGGTCGC CGCCCTGCAC TCACCCACCA CCGCCATCGT CGACTATCCC GGGGTCGCGC GGGCCCTGCG TACCGAGATC GTCGCCGCTG GCGGGGCCGT GCGCACCGGA GCCGAAGTGA TCGGGGTGGA GGATCGTCCA GCCGGCGTCC ACCTTCGCCT CACGGTCGCC GGAACCGCGC GCGCGCGGCC CAACGGCAAT CACGAGATGG CGTCCCGCAA CGGTGGCCGG GTCGCCGTCG TCTCCGAAAG CGTCGGGCCG TTCGACCTGC TGATCTCCTG TGCCGGGCTG CAGTCGGATC TGGTGGCGAC ACTGACCGGC GAGGACGCCT CCCCGCAGAT CGTTCCCTTC CGGGGCGACT ACTGGCTGCT GCGCCCCGAG CGGCGTGGCC TCGTCCATGG GCTGATCTAT CCGGTTCCGG ATCCGCGATA TCCCTTCCTC GGTATCCATC TCACCAAGCG CATCGACGGG GAGATCCTGG TCGGGCCGAA CGCGGTGCTG GCCACTGCCC GAGAGGGGTA CACGGTCGGC ACCGTCCAGG GCGCTGACCT GCGACGGACG CTCGCCTGGC CGGGGTTCCA CAAGATGGCG AAGACCCACT GGAAGACCGG CGCCAAGGAG ATGCTGCGCA CGGCGAGCAA GCGGGCCTTC GTCGCCGAGG CCCGGCGCTA TGTCCCCGAG CTGCGGGCCA CCGACGTGGT TCGTGGCCCC GCGGGAGTCC GGGCCCAGGC CGTCGCCCGC GACGGTAGCC TCGTCGACGA CTTCGTCCTG TCCCACAACG GGCGGGTCGT GCATGTCCGT AACGCGCCAT CTCCCGGCGC GACGGCGTCG TTGGCGATCG CTGAGCACAT CGTCAGCAAA ATCGTTCCTG AACGGGCCAG CTGA
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Protein sequence | MVGRIAVIGG GILGLAVARR LGQVEPGSAV TVFEKEQDIA RHQTGRNSGV VHAGLYYVPG SLKAILCRRG VGLLREFCAT HRIRYDECGK IVVAVDNSEL ERLAEIEKRA TANGVPRTRM LDADELRSVE PHARGVAALH SPTTAIVDYP GVARALRTEI VAAGGAVRTG AEVIGVEDRP AGVHLRLTVA GTARARPNGN HEMASRNGGR VAVVSESVGP FDLLISCAGL QSDLVATLTG EDASPQIVPF RGDYWLLRPE RRGLVHGLIY PVPDPRYPFL GIHLTKRIDG EILVGPNAVL ATAREGYTVG TVQGADLRRT LAWPGFHKMA KTHWKTGAKE MLRTASKRAF VAEARRYVPE LRATDVVRGP AGVRAQAVAR DGSLVDDFVL SHNGRVVHVR NAPSPGATAS LAIAEHIVSK IVPERAS
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