| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1452 |
|---|
| Symbol | |
|---|
| ID | 3903184 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 1743372 |
|---|
| End bp | 1744316 |
|---|
| Gene Length | 945 bp |
|---|
| Protein Length | 314 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637878789 |
|---|
| Product | condensin subunit ScpA |
|---|
| Protein accession | YP_480558 |
|---|
| Protein GI | 86740158 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1354] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00707471 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGGT CTCGCGCCGC CCCGGCTGAC CAGGCCGCTC CGGCTGACCA GACCGACGGG
AAGGCCGCCC CGCGCACCGG CGTGCCGACG GGTCGTGGTG GGCGCACGGA GACCTTCGTC
GTCGAACTCG ACAACTTCAC CGGCCCCTTC GATCTGCTGC TCTCGCTCAT CGCCAAGCAT
CGCCTCGACG TGACCGAGGT CGCGCTCTCC CAAGTCACCG ACGAGTTCGT CGCGCACATC
CGGCGGCTGG GGGACCGGTT CGACCTCGGC CAGGCCACCG AGTTCCTGGT GATCGCGGCG
ACCCTGCTCG ACCTGAAGGC GGCCCGGCTG CTGCCGGGCG CCCTGTCCGA GGACGAGTCG
GCGGACCTGG CCCTGCTGGA GGCCCGCGAC CTGCTTTTCG CCCGGCTGCT GCAGTACAAG
GCGTACAAGG AGGCTGCGGC GCTCTTCGCC GGCCTCATGG CCCTGGAGGC GCGCCACACC
CCCCGGGCGG TACCCCTGGA GCCCCGTTAC GCCGCCGCGC TGCCGGAGGT CCAGATCGGC
ATCGGCCCGA CGGAGCTCGC GGCGCTCGCG GCCCGGCTGC GTGAGCCGCC GCTGCCGCCG
CTGGTTGCGA CCGATCACGT GCACCTGCCC CGGATCAGCG TGCGGGAGCA CATGCTCGCC
GTCATCGCGA TGCTGCGCGA GGTGGGCACC GCGACCTTCG GGATGCTGTG CGTCGGCTGT
CGGCAGACCA TCGAGGTGGT GGCCCGGTTC CTGGCGCTGC TGGAGCTCTT CCGCGAGGGC
CGGATCTCCT TCGACCAGCA GGTCCCGCTC GGCGAGCTGA CGGTGCGCTG GATCGCCCTG
GATCCGGCGG TCGAGGCGGA CGCCCCGCCG ATCGGCCACG GGCTGTTCGG ATCTGATCGG
TACGGTGGGG ACGCGCAGGA GGAGTCGCGG GAGGTGGCGT CGTGA
|
|---|
| Protein sequence | MTRSRAAPAD QAAPADQTDG KAAPRTGVPT GRGGRTETFV VELDNFTGPF DLLLSLIAKH
RLDVTEVALS QVTDEFVAHI RRLGDRFDLG QATEFLVIAA TLLDLKAARL LPGALSEDES
ADLALLEARD LLFARLLQYK AYKEAAALFA GLMALEARHT PRAVPLEPRY AAALPEVQIG
IGPTELAALA ARLREPPLPP LVATDHVHLP RISVREHMLA VIAMLREVGT ATFGMLCVGC
RQTIEVVARF LALLELFREG RISFDQQVPL GELTVRWIAL DPAVEADAPP IGHGLFGSDR
YGGDAQEESR EVAS
|
|---|
| |